| Protein: | YPL060C-A |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1104 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL060C-A.
| Description | E-value | Query Range |
Subject Range |
|
|
654.0 | [0..1] | [1101..1] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ YQRNLNRFKT 60
61 ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
121 HI
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [123-543] |
1 11 21 31 41 51
| | | | | |
1 DATGTYYLFD TLTSTNKRFY PKDCVFDYRT NNVENIPILL NNFKKFIKKY QFDDVFENDI 60
61 IEIDPRENEI LCKIIKEGLG ESLDIMNTNT TDIFRIIDGL KNKYRSLHGR DVRIRAWEKV 120
121 LVDTTCRNSA LLMNKLQKLV LMEKWIFSKC CQDCPNLKDY LQEAIMGTLH ESLRNSVKQR 180
181 LYNIPHNVGI NHEEFLINTV IETVIDLSPI ADDQIENSCM YCKSVFHCSI NCKKKPNREL 240
241 RPDSTNFSKT YYLQGAQRQQ QLKSSAKEQK SWNKTQKKSN KVYNSKKLVI IDTGSGVNIT 300
301 NDKTLLHNYE DSNRSTRFFG IGKNSSVSVK GYGYIKIKNG HNNTDNKCLL TYYVPEEEST 360
361 IISCYDLAKK TKMVLSRKYT RLGNKIIKIK TKIVNGVIHV KMNELIERPS DDSKINAIKP 420
421 T
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1bqnA |
| Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleotidyltransferase activity | 2.08067737569595 | bayes_pls_golite062009 |
| DNA polymerase activity | 1.30231569478597 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 1.29719382213292 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.19125536460488 | bayes_pls_golite062009 |
| ribonuclease activity | 0.969438660919194 | bayes_pls_golite062009 |
| binding | 0.681153419173075 | bayes_pls_golite062009 |
| transferase activity | 0.564818692007078 | bayes_pls_golite062009 |
| catalytic activity | 0.506386500680103 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 0.139403453656723 | bayes_pls_golite062009 |
| RNA polymerase activity | 0.139403453656723 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0649376648268392 | bayes_pls_golite062009 |
| DNA binding | 0.0337904155200424 | bayes_pls_golite062009 |
|
Region A: Residues: [544-868] |
1 11 21 31 41 51
| | | | | |
1 SSPGFKLNKR SITLEDAHKR MGHTGIQQIE NSIKHNHYEE SLDLIKEPNE FWCQTCKISK 60
61 ATKRNHYTGS MNNHSTDHEP GSSWCMDIFG PVSSSNADTK RYMLIMVDNN TRYCMTSTHF 120
121 NKNAETILAQ IRKNIQYVET QFDRKVREIN SDRGTEFTND QIEEYFISKG IHHILTSTQD 180
181 HAANGRAERY IRTIVTDATT LLRQSNLRVK FWEYAVTSAT NIRNCLEHKS TGKLPLKAIS 240
241 RQPVTVRLMS FLPFGEKGII WNHNHKKLKP SGLPSIILCK DPNSYGYKFF IPSKNKIVTS 300
301 DNYTIPNYTM DGRVRNTQNI YKSHQ
|
| Detection Method: | |
| Confidence: | 43.30103 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nuclease activity | 1.94987701094917 | bayes_pls_golite062009 |
| ribonuclease activity | 0.969438660919194 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 0.787213833707638 | bayes_pls_golite062009 |
| exonuclease activity | 0.738049151007118 | bayes_pls_golite062009 |
| catalytic activity | 0.709734459150736 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.332143782945747 | bayes_pls_golite062009 |
| hydrolase activity | 0.301910249637397 | bayes_pls_golite062009 |
| binding | 0.205040227344888 | bayes_pls_golite062009 |
|
Region A: Residues: [869-1007] |
1 11 21 31 41 51
| | | | | |
1 FSSHNDNEED QIETVTNLCE ALENYEDDNK PITRLEDLFT EEELSQIDSN AKYPSPSNNL 60
61 EGDLDYVFSD VEESGDYDVE SELSTTNTSI STDKNKILSN KDFNSELAST EISISEIDKK 120
121 GLINTSHIDE DKYDEKVHR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1008-1104] |
1 11 21 31 41 51
| | | | | |
1 IPSIIQEKLV GSKNTIKIND ENRISDRIRS KNIGSILNTG LSRCVDITDE SITNKDESMH 60
61 NAKPELIQEQ FNKTNHETSF PKEGSIGTKC KIPKYRQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
