Protein: | YPL060C-A |
Organism: | Saccharomyces cerevisiae |
Length: | 1104 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL060C-A.
Description | E-value | Query Range |
Subject Range |
|
654.0 | [0..1] | [1101..1] |
Region A: Residues: [1-122] |
1 11 21 31 41 51 | | | | | | 1 MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ YQRNLNRFKT 60 61 ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120 121 HI |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [123-543] |
1 11 21 31 41 51 | | | | | | 1 DATGTYYLFD TLTSTNKRFY PKDCVFDYRT NNVENIPILL NNFKKFIKKY QFDDVFENDI 60 61 IEIDPRENEI LCKIIKEGLG ESLDIMNTNT TDIFRIIDGL KNKYRSLHGR DVRIRAWEKV 120 121 LVDTTCRNSA LLMNKLQKLV LMEKWIFSKC CQDCPNLKDY LQEAIMGTLH ESLRNSVKQR 180 181 LYNIPHNVGI NHEEFLINTV IETVIDLSPI ADDQIENSCM YCKSVFHCSI NCKKKPNREL 240 241 RPDSTNFSKT YYLQGAQRQQ QLKSSAKEQK SWNKTQKKSN KVYNSKKLVI IDTGSGVNIT 300 301 NDKTLLHNYE DSNRSTRFFG IGKNSSVSVK GYGYIKIKNG HNNTDNKCLL TYYVPEEEST 360 361 IISCYDLAKK TKMVLSRKYT RLGNKIIKIK TKIVNGVIHV KMNELIERPS DDSKINAIKP 420 421 T |
Detection Method: | ![]() |
Confidence: | 45.69897 |
Match: | 1bqnA |
Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
nucleotidyltransferase activity | 2.08067737569595 | bayes_pls_golite062009 |
DNA polymerase activity | 1.30231569478597 | bayes_pls_golite062009 |
DNA-directed DNA polymerase activity | 1.29719382213292 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 1.19125536460488 | bayes_pls_golite062009 |
ribonuclease activity | 0.969438660919194 | bayes_pls_golite062009 |
binding | 0.681153419173075 | bayes_pls_golite062009 |
transferase activity | 0.564818692007078 | bayes_pls_golite062009 |
catalytic activity | 0.506386500680103 | bayes_pls_golite062009 |
DNA-directed RNA polymerase activity | 0.139403453656723 | bayes_pls_golite062009 |
RNA polymerase activity | 0.139403453656723 | bayes_pls_golite062009 |
nucleic acid binding | 0.0649376648268392 | bayes_pls_golite062009 |
DNA binding | 0.0337904155200424 | bayes_pls_golite062009 |
Region A: Residues: [544-868] |
1 11 21 31 41 51 | | | | | | 1 SSPGFKLNKR SITLEDAHKR MGHTGIQQIE NSIKHNHYEE SLDLIKEPNE FWCQTCKISK 60 61 ATKRNHYTGS MNNHSTDHEP GSSWCMDIFG PVSSSNADTK RYMLIMVDNN TRYCMTSTHF 120 121 NKNAETILAQ IRKNIQYVET QFDRKVREIN SDRGTEFTND QIEEYFISKG IHHILTSTQD 180 181 HAANGRAERY IRTIVTDATT LLRQSNLRVK FWEYAVTSAT NIRNCLEHKS TGKLPLKAIS 240 241 RQPVTVRLMS FLPFGEKGII WNHNHKKLKP SGLPSIILCK DPNSYGYKFF IPSKNKIVTS 300 301 DNYTIPNYTM DGRVRNTQNI YKSHQ |
Detection Method: | ![]() |
Confidence: | 43.30103 |
Match: | 1k6yA |
Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
nuclease activity | 1.94987701094917 | bayes_pls_golite062009 |
ribonuclease activity | 0.969438660919194 | bayes_pls_golite062009 |
hydrolase activity, acting on ester bonds | 0.787213833707638 | bayes_pls_golite062009 |
exonuclease activity | 0.738049151007118 | bayes_pls_golite062009 |
catalytic activity | 0.709734459150736 | bayes_pls_golite062009 |
3'-5' exonuclease activity | 0.332143782945747 | bayes_pls_golite062009 |
hydrolase activity | 0.301910249637397 | bayes_pls_golite062009 |
binding | 0.205040227344888 | bayes_pls_golite062009 |
Region A: Residues: [869-1007] |
1 11 21 31 41 51 | | | | | | 1 FSSHNDNEED QIETVTNLCE ALENYEDDNK PITRLEDLFT EEELSQIDSN AKYPSPSNNL 60 61 EGDLDYVFSD VEESGDYDVE SELSTTNTSI STDKNKILSN KDFNSELAST EISISEIDKK 120 121 GLINTSHIDE DKYDEKVHR |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [1008-1104] |
1 11 21 31 41 51 | | | | | | 1 IPSIIQEKLV GSKNTIKIND ENRISDRIRS KNIGSILNTG LSRCVDITDE SITNKDESMH 60 61 NAKPELIQEQ FNKTNHETSF PKEGSIGTKC KIPKYRQ |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.