| Protein: | GPB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 897 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..897] | [1..897] |
|
|
0.001 | [659..756] | [282..384] |
|
Region A: Residues: [1-645] |
1 11 21 31 41 51
| | | | | |
1 MPQASTFGSH SLEAHPLHIQ PAVHIKLSKE ERSHYREQYD SLKYISNYVS VFDQALSDNI 60
61 DSRIRKENEA LLKKYYESRK PFTFTSFRQG SVISSSDSST GFTERTKTYC FLNDFVSNCV 120
121 NEVDPYTLKM TVRNRNTALN MENLDDERKS KDDIYDFEDN TDDECNAKCH GAFHYSSERL 180
181 EILRSRSTIS YFKYYKKLLT VDLRDSDVLK RHNLWMPMIT RRFRFLLVSS SKPEDVRLTT 240
241 PIPTFSESDL DIFKNKTCPL FINGTDCVPR SYDTFSGSSV IASIFSEYKL PSLSYHCSVE 300
301 LNDQLFIVGG LMACHRYDEE APDLKDFYVD GIKNLPPPLI PELINNPSMI PNPHLYCFSL 360
361 TSSRLTRPDI SGYIPPPLVC TQGCKLTERH IFLYGGFEIK SETQVDDKGR YFIRKRAFLN 420
421 NTGYILDTVT FNFSKIELVA PPYQFAIYNN FSPRFGHMQA SISNSNNNVS NENTTTSAKG 480
481 RRSISPYRQG NGDHKIDDLV GSPGSTDYLE DDAIPPVTNP RSTDSLSSKH CSTATHICSS 540
541 VNTILIFGGY SQTGDDKYEA MNDMWKINIP VVSRGKRNYY KFADTVTATK IPIIDDPELW 600
601 PSRRAFSACC VPDYFTKDVE PIETRLLRNL KNDFSIDLEI RPGNK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [646-794] |
1 11 21 31 41 51
| | | | | |
1 PSQPLFPNIP HSRKEKKSGR DSMHISNSNN STSEDTSSKS TRNTTSSPPT SPKHTPPLNP 60
61 SKKCASIGRT IAFHGGSDGY DVCSDMWWFD FDSETWTKID LYAKTQEESD GLVPINLCMV 120
121 GHSMTTVGHK VVLIGGLRQG DVDRIYRDE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.333 | 0.598 | signal transduction | b.55.1 | PH domain-like |
| View | Download | 0.210 | 0.135 | signal transduction | c.47.1 | Thioredoxin-like |
| View | Download | 0.450 | 0.044 | cytoplasm | d.109.1 | Actin depolymerizing proteins |
|
Region A: Residues: [795-897] |
1 11 21 31 41 51
| | | | | |
1 TLPEEVISGV PLGSGVINVV DLNTQCLQGC KLIRNDGDTK ESVIMDPHVG TPHQVLAVAG 60
61 TIELVKGTMT LIGGVVAGRE DISSLYLRGA VLQFILPSMN LAN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.510 | d.93.1 | SH2 domain |
| View | Download | 0.370 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.365 | b.26.1 | SMAD/FHA domain |
| View | Download | 0.369 | a.74.1 | Cyclin-like |
| View | Download | 0.391 | a.28.1 | ACP-like |
| View | Download | 0.314 | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.300 | c.51.2 | TolB, N-terminal domain |
| View | Download | 0.297 | a.7.7 | BAG domain |
| View | Download | 0.238 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.235 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.232 | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.224 | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.213 | d.24.1 | Pili subunits |
