| Protein: | HAP5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 242 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAP5.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-54 | [1..242] | [1..242] |
|
|
6.0E-45 | [27..242] | [1..216] |
|
|
3.0E-36 | [66..239] | [1..167] |
|
|
3.0E-34 | [136..235] | [1..100] |
|
|
4.0E-34 | [69..239] | [1..166] |
|
|
7.0E-34 | [138..235] | [4..101] |
|
|
1.0E-33 | [141..235] | [14..108] |
|
|
1.0E-33 | [66..239] | [1..167] |
|
|
2.0E-33 | [136..235] | [1..100] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MTDRNFSPQQ GQGPQESLPE GPQPSTMIQR EEMNMPRQYS EQQQLQENEG EGENTRLPVS 60
61 EEEFRMVQEL QAIQAGHDQA NLPPSGRGSL EGEDNGNSDG ADGEMDEDDE EYDVFRNVGQ 120
121 GLVGHYKEIM IRYWQELINE IE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [143-242] |
1 11 21 31 41 51
| | | | | |
1 STNEPGSEHQ DDFKSHSLPF ARIRKVMKTD EDVKMISAEA PIIFAKACEI FITELTMRAW 60
61 CVAERNKRRT LQKADIAEAL QKSDMFDFLI DVVPRRPLPQ
|
| Detection Method: | |
| Confidence: | 311.67837 |
| Match: | 1n1jB_ |
| Description: | Nuclear transcription factor Y subunit gamma (Nf-Yc2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 4.24625687315724 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| nucleic acid binding | 3.93473976418251 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 3.89663803383145 | bayes_pls_golite062009 |
| binding | 3.84636641231951 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.38228606466152 | bayes_pls_golite062009 |
| transcription factor activity | 2.31114764804139 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| protein binding | 0.978906971260821 | bayes_pls_golite062009 |
| transcription repressor activity | 0.72554769377984 | bayes_pls_golite062009 |
