| Protein: | SLK19 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 821 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLK19.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-88 | [3..818] | [1070..1911] |
|
|
7.0E-87 | [3..818] | [87..928] |
|
|
7.0E-87 | [3..818] | [1076..1917] |
|
|
2.0E-86 | [3..818] | [1071..1912] |
|
|
3.0E-86 | [3..818] | [1072..1913] |
|
Region A: Residues: [1-458] |
1 11 21 31 41 51
| | | | | |
1 MNEVPTTPVR LILGQAQQRE QNSENCSQER NPRTFNSEPD SSFNSPGSSQ FVIHPHEPLE 60
61 KEKDEKQDLD RSIDYGRSSA LNNKNNANPL ENIDINKMFD DKKSDSGTND DKGGASTSDK 120
121 HVLALNYSPI RVEMNSSEKR SDKNVDVDEN DKEGSHINKK LKLQLESVPD LKQSSTKDII 180
181 NDKEEIMSSP MAIDMIETNI SPNKFIINDG VERNDSFNIN TDTLKLENDI NEKQQEEDFI 240
241 KSNSNNVVNI DNAYKEKEDE ENDITNSHIN RLTPLYETSA RESNSNEEGR NDYDDDNQLD 300
301 IRHDNFQIVA KRNEELTDQI YHLNQMLNSL ISKNESLSFQ YEKLNKNHQL LIDLTNEKLD 360
361 KLNTERESDI AKVEKFKKRI KELNTEIKVL NSNQKILQEK FDASITEVNH IKGEHENTVN 420
421 TLQQNEKILN DKNVELENMK AELKGNNDKL SEYETTLN
|
| Detection Method: |  |
| Confidence: | 33.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [459-552] |
1 11 21 31 41 51
| | | | | |
1 DLNSRIVQLN DKIESTDIVL KSKENELDNL KLSLKETLSI SKDFNDSDLI GQINELISTK 60
61 NNLQQKMDDL NNLNDDNLKV VQDKLIKNEE TLKL
|
| Detection Method: | |
| Confidence: | 11.09691 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [553-655] |
1 11 21 31 41 51
| | | | | |
1 KEAEIDSLNS EMDELKKQIT SKDDEFKMWQ SKYETVEDEA KIRNAEVTEL NGDIEDLKES 60
61 KLHLEETITE LENKVHKLEN ECELEKQKFE KTSLELESLQ LKN
|
| Detection Method: | |
| Confidence: | 11.09691 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.03440533979709 | bayes_pls_golite062009 |
| DNA binding | 3.65811636468179 | bayes_pls_golite062009 |
| nucleic acid binding | 3.60537549931501 | bayes_pls_golite062009 |
| transcription factor activity | 3.22337383289465 | bayes_pls_golite062009 |
| binding | 2.87991790206998 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.1457670954804 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87665013586148 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.77682537012597 | bayes_pls_golite062009 |
| actin binding | 1.48871115327078 | bayes_pls_golite062009 |
| transcription repressor activity | 1.34516545338213 | bayes_pls_golite062009 |
| transcription activator activity | 1.19647956161774 | bayes_pls_golite062009 |
| protein binding | 1.03780839342631 | bayes_pls_golite062009 |
| transcription factor binding | 0.86100194020002 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.57258935872519 | bayes_pls_golite062009 |
| chromatin binding | 0.400813784720149 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.33597123085446 | bayes_pls_golite062009 |
| actin filament binding | 0.26311995282891 | bayes_pls_golite062009 |
| centromeric DNA binding | 0.09491254824772 | bayes_pls_golite062009 |
|
Region A: Residues: [656-821] |
1 11 21 31 41 51
| | | | | |
1 SNIQAEHIKE LENLHENLIS LQNELKISSD RITTLTKENE VLMEQNNNNN NSVTLSNDQK 60
61 DRDDEKIKSL GKQVQDWKEK YEAKEKDTNK RLKLLAEDLY IQYSSKHEQK VKLLKKGYEN 120
121 KYQNKFDQLN LENKTLSEEI EQLNKQLSSE REEKQELLKL LENEKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
