| Protein: | HMS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 434 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMS1.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-84 | [1..434] | [1..434] |
|
|
8.0E-56 | [6..409] | [30..439] |
|
|
4.0E-55 | [6..409] | [30..433] |
|
|
2.0E-53 | [6..408] | [30..438] |
|
|
9.0E-53 | [24..420] | [1..395] |
|
|
1.0E-51 | [24..371] | [103..417] |
|
|
4.0E-51 | [10..367] | [103..436] |
|
|
5.0E-51 | [23..413] | [34..426] |
|
Region A: Residues: [1-263] |
1 11 21 31 41 51
| | | | | |
1 MPNFQKPFSG SSDGNSVMND LGNKVAIKVF DCRSAQDGSE EQNVNVTTNQ MYLMFQSNNY 60
61 NVPPPNYNTE DLGSQGPPTH AYYAPFQHPI HLQPPVPPVY KNNTYSATDQ YSDSSFPNTS 120
121 GHTPVIDSNY YNDALASIPT TTTGSTTMTT DNGNTIDSEE YIDNMEVFSS EENENIDNVK 180
181 QTDLKSEKDS SLLSAASIVK KEQLSGFENF LPLSKTESPL VTADEIKSSL NLENIDNADS 240
241 MSFKLKTSPI RKHFHVKPKR ITR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [264-434] |
1 11 21 31 41 51
| | | | | |
1 VRTGRVSHNI IEKKYRSNIN DKIEQLRRTV PTLRVAYKKC NDLPITSRDL ADLDGLEPAT 60
61 KLNKASILTK SIEYICHLER KCLQLSLANQ HLSNDTRDSF VHLTEPSQPL SDNSSSEQVQ 120
121 KQTRSCQRQR QRQPRQQQPL HNIQYNIPHQ NGLMSGTNNS HDMDFNNAGD F
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1am9A_ |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.71844613492852 | bayes_pls_golite062009 |
| DNA binding | 1.86563747084791 | bayes_pls_golite062009 |
| transcription regulator activity | 1.821185547269 | bayes_pls_golite062009 |
| nucleic acid binding | 1.7383733164042 | bayes_pls_golite062009 |
| transcription factor activity | 1.60036420700371 | bayes_pls_golite062009 |
| protein binding | 1.2438981435533 | bayes_pls_golite062009 |
| transcription factor binding | 0.181447848144379 | bayes_pls_golite062009 |
