| Protein: | YSP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 478 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..478] | [1..478] |
|
|
0.0 | [37..471] | [5..444] |
|
|
0.0 | [34..471] | [1..444] |
|
|
0.0 | [38..471] | [5..452] |
|
|
0.0 | [32..471] | [3..458] |
|
|
0.0 | [35..471] | [3..447] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MKFSTILPIL WANCCLCMII PDFDGIVRFI ENIDGTRSVR AGEGLGQHDP GNFHTEHQHV 60
61 AHKTEFLP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.408 | d.58.17 | Metal-binding domain |
| View | Download | 0.455 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.655 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.377 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.332 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.310 | b.1.18 | E set domains |
| View | Download | 0.279 | a.4.1 | Homeodomain-like |
| View | Download | 0.255 | a.101.1 | Uteroglobin-like |
| View | Download | 0.246 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.246 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.241 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.236 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.236 | d.58.17 | Metal-binding domain |
| View | Download | 0.232 | a.112.1 | Description not found. |
| View | Download | 0.231 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.220 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.214 | d.95.2 | Homing endonucleases |
| View | Download | 0.212 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
|
Region A: Residues: [69-172] |
1 11 21 31 41 51
| | | | | |
1 YRYVIVFNED ISLQQIQSHM QVVQKDHSTS VGKLTENDAF WRVISSSVSS KSQFGGIDNF 60
61 FDINGLFRGY TGYFTDEIIK IISQDPIIKF VEQETTVKIS NSSL
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1kn6A_ |
| Description: | Prohormone convertase 1 pro-domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.68838733699853 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.20928698248021 | bayes_pls_golite062009 |
| endopeptidase activity | 3.45296270246929 | bayes_pls_golite062009 |
| hydrolase activity | 3.36483239319728 | bayes_pls_golite062009 |
| serine hydrolase activity | 1.90036575189745 | bayes_pls_golite062009 |
| serine-type peptidase activity | 1.89198766955068 | bayes_pls_golite062009 |
| binding | 1.85875472341221 | bayes_pls_golite062009 |
| serine-type endopeptidase activity | 1.23150012549143 | bayes_pls_golite062009 |
| catalytic activity | 0.597535457699629 | bayes_pls_golite062009 |
| protein binding | 0.380935140681308 | bayes_pls_golite062009 |
|
Region A: Residues: [173-478] |
1 11 21 31 41 51
| | | | | |
1 QEEAPWGLHR VSHREKPKYG QDLEYLYEDA AGKGVTSYVL DTGIDTEHED FEGRAEWGAV 60
61 IPANDEASDL NGHGTHCAGI IGSKHFGVAK NTKIVAVKVL RSNGEGTVSD VIKGIEYVTK 120
121 EHIESSKKKN KEFKGSTANL SLGSSKSLAM EMAVNAAVDS GVHFAIAAGN EDEDACLSSP 180
181 AGAEKSITVG ASTFSDDRAF FSNWGTCVDV FAPGINIMST YIGSRNATLS LSGTSMASPH 240
241 VAGILSYFLS LQPAPDSEFF NDAPSPQELK EKVLKFSTQG VLGDIGDDTP NKLIYNGGGK 300
301 KLDGFW
|
| Detection Method: | |
| Confidence: | 565.67837 |
| Match: | 1ic6A_ |
| Description: | Proteinase K |
Matching Structure (courtesy of the PDB): |
|
