| Protein: | RTG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 177 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTG1.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-94 | [1..165] | [1..165] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MSSIPAGTDP GSCGANFKND RKRRDKINDR IQELLSIIPK DFFRDYYGNS GSNDTLSEST 60
61 PGALGLSSKA KGTGTKDGKP NKGQILTQAV EYISHLQNQV DTQNREEVEL MVKATQLAKQ 120
121 TGTIVNDINL ENTSAEVALS RIGVGPLAAT NDDSVRPPAK RLSSFEYGGY GEYGNGS
|
| Detection Method: |  |
| Confidence: | 7.44 |
| Match: | 1am9A |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.08855036296174 | bayes_pls_golite062009 |
| DNA binding | 4.62750596333801 | bayes_pls_golite062009 |
| nucleic acid binding | 4.3580974006648 | bayes_pls_golite062009 |
| transcription factor activity | 4.22667982381176 | bayes_pls_golite062009 |
| binding | 3.63719401349018 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.11931609869373 | bayes_pls_golite062009 |
| transcription factor binding | 2.33137487648005 | bayes_pls_golite062009 |
| transcription activator activity | 2.29259809049377 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.9803796973294 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 1.81708512383143 | bayes_pls_golite062009 |
| protein binding | 1.48748521104247 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.30186253699056 | bayes_pls_golite062009 |
| transcription repressor activity | 0.828519845330998 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.431241241672784 | bayes_pls_golite062009 |
| promoter binding | 0.359574623760154 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.172100901723138 | bayes_pls_golite062009 |
