YRC Public Data Repository - Protein Structure Prediction

Protein:	MDJ2
Organism:	Saccharomyces cerevisiae
Length:	146 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDJ2.

Description	E-value	Query Range	Subject Range
gi\|18420568, gi\|... - gi\|18420568\|ref\|NP_568076.1\| DNAJ heat shock family protein [Arabidopsis thaliana], gi\|17380628\|gb\|A...	9.0E-32	[19..143]	[20..142]
MDJ2 - Constituent of the mitochondrial import motor associated with the presequence translocase; function ... MDJ2_YEAST - Mitochondrial DnaJ homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDJ2 PE=1 S...	3.0E-28	[1..146]	[1..146]
CE17461 - WBGene00001024 locus:dnj-6 status:Predicted TR:O76381 protein_id:AAC19208.1	3.0E-24	[32..144]	[32..153]
DNAJA4 - DnaJ (Hsp40) homolog, subfamily A, member 4	6.0E-24	[80..143]	[1..61]
DNJA4_MOUSE - DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=1 SV=1	1.0E-23	[80..143]	[1..61]
DNAJ_METTE - Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1 gi\|5824078\|emb\|C... - heat shock protein 40(DnaJ) [Methanosarcina thermophila]	1.0E-23	[80..145]	[1..65]
gi\|224501588 - gi\|224501588\|ref\|ZP_03669895.1\| heat shock protein DnaJ [Listeria monocytogenes FSL R2-561] DNAJ_LISMO - Chaperone protein DnaJ OS=Listeria monocytogenes GN=dnaJ PE=3 SV=1 gi\|224500508 - gi\|224500508\|ref\|ZP_03668857.1\| heat shock protein DnaJ [Listeria monocytogenes Finland 1988] DNAJ_LISMO - Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ ... DNAJ_LISM4 - Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=dnaJ PE=3 SV=1	1.0E-23	[81..145]	[1..64]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPIIIGLG VTMVALSVKS GLNAWTVYKT LSPLTIAKLN NIRIENPTAG YRDALKFKSS  60
   61 LIDEELKNRL NQYQGGFAPR MT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPEALLILDI SAREINHLDE KLLKKKHRKA MVRNHPDRGG SPYMAAKINE AKEVLERSVL  60
   61 LRKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1hdj__
Description:	HSP40
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits