| Protein: | ATG4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 506 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [13..506] | [1..494] |
|
|
0.0 | [83..401] | [25..358] |
|
|
0.0 | [84..409] | [50..362] |
|
|
9.0E-94 | [87..397] | [151..475] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MDDFLSRIGV IYMQRWLQLW KMDLVQKVSH GVFEGSSEEP AALMNHDYIV LGEVYPERDE 60
61 ESGAEQCEQD CRYRGEAVSD GFLSSLFGRE ISSYTKEFLL DVQSRVNFTY RTRFVPIARA 120
121 PD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.274 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.293 | a.1.1 | Globin-like |
| View | Download | 0.402 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.270 | g.53.1 | TAZ domain |
| View | Download | 0.232 | a.130.1 | Chorismate mutase II |
| View | Download | 0.201 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
|
Region A: Residues: [123-445] |
1 11 21 31 41 51
| | | | | |
1 GPSPLSLNLL VRTNPISTIE DYIANPDCFN TDIGWGCMIR TGQSLLGNAL QILHLGRDFR 60
61 VNGNESLERE SKFVNWFNDT PEAPFSLHNF VSAGTELSDK RPGEWFGPAA TARSIQSLIY 120
121 GFPECGIDDC IVSVSSGDIY ENEVEKVFAE NPNSRILFLL GVKLGINAVN ESYRESICGI 180
181 LSSTQSVGIA GGRPSSSLYF FGYQGNEFLH FDPHIPQPAV EDSFVESCHT SKFGKLQLSE 240
241 MDPSMLIGIL IKGEKDWQQW KLEVAESAII NVLAKRMDDF DVSCSMDDVE SVSSNSMKKD 300
301 ASNNENLGVL EGDYVDIGAI FPH
|
| Detection Method: | |
| Confidence: | 170.443697 |
| Match: | PF03416 |
| Description: | Peptidase family C54 |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [446-506] |
1 11 21 31 41 51
| | | | | |
1 TTNTEDVDEY DCFQDIHCKK QKIVVMGNTH TVNANLTDYE VEGVLVEKET VGIHSPIDEK 60
61 C
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.601 | g.3.11 | EGF/Laminin |
| View | Download | 0.691 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.530 | d.58.17 | Metal-binding domain |
| View | Download | 0.511 | b.34.1 | C-terminal domain of transcriptional repressors |
| View | Download | 0.598 | g.44.1 | RING/U-box |
| View | Download | 0.476 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.470 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.432 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.427 | g.27.1 | Fibronectin type I module |
| View | Download | 0.394 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.359 | b.34.3 | Myosin S1 fragment, N-terminal domain |
| View | Download | 0.344 | d.58.49 | YajQ-like |
| View | Download | 0.337 | d.82.1 | Copper amine oxidase, domain N |
| View | Download | 0.300 | b.72.1 | WW domain |
| View | Download | 0.290 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.254 | g.27.1 | Fibronectin type I module |
| View | Download | 0.252 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.238 | b.7.2 | Periplasmic chaperone C-domain |
