| Protein: | RRG9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 214 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRG9.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-98 | [1..214] | [1..214] |
|
|
4.0E-30 | [59..148] | [195..284] |
|
|
3.0E-27 | [66..140] | [6..80] |
|
|
2.0E-25 | [70..140] | [1..71] |
|
|
1.0E-17 | [78..139] | [94..157] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MNILRIACRS FHCLRCGPLL NENRGWSSKK IIKLVNKSSL SNKEFTEKVR DGTKDIPEWK 60
61 KQKMAVRKKL QGQRWNPPKK ISQEQMEALR LLKFNFPELT ASDLADRFKI SPEAVRRILK 120
121 SNWKRTDEEN NNTYERWKRR GERIKEMY
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.251 | 0.035 | mitochondrion organization | a.74.1 | Cyclin-like |
| View | Download | 0.253 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| Term | Confidence | Notes |
| transcription regulator activity | 3.52037235769064 | bayes_pls_golite062009 |
| nucleic acid binding | 3.26601886211701 | bayes_pls_golite062009 |
| DNA binding | 3.24659040730132 | bayes_pls_golite062009 |
| transcription factor activity | 2.70611942641509 | bayes_pls_golite062009 |
| binding | 1.78064857180719 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.51287971227547 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.34461031960924 | bayes_pls_golite062009 |
| transcription repressor activity | 1.02090023542008 | bayes_pls_golite062009 |
| transcription activator activity | 0.9113397633272 | bayes_pls_golite062009 |
| catalytic activity | 0.794231598246996 | bayes_pls_golite062009 |
| protein binding | 0.64696728529788 | bayes_pls_golite062009 |
| transcription factor binding | 0.525225093153448 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.134558516082252 | bayes_pls_golite062009 |
| chromatin binding | 0.0850288412922495 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.043605800048317 | bayes_pls_golite062009 |
|
Region A: Residues: [149-214] |
1 11 21 31 41 51
| | | | | |
1 QRKEDADFVS NQIVTSRKII LGSNSNSPEL IARNVRTFKP FKPNNSTPEK KNTNKLYILK 60
61 HLGSKQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.482 | a.4.1 | Homeodomain-like |
| View | Download | 0.356 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.482 | a.4.1 | Homeodomain-like |
| View | Download | 0.407 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.417 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.356 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.407 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.417 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.400 | a.112.1 | Description not found. |
| View | Download | 0.400 | a.112.1 | Description not found. |
| View | Download | 0.323 | a.21.1 | HMG-box |
| View | Download | 0.295 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.289 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.251 | a.28.1 | ACP-like |
| View | Download | 0.246 | a.3.1 | Cytochrome c |
| View | Download | 0.244 | a.2.3 | Chaperone J-domain |
| View | Download | 0.242 | a.112.1 | Description not found. |
| View | Download | 0.240 | a.3.1 | Cytochrome c |
| View | Download | 0.230 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.229 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.226 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.221 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.207 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.200 | a.28.2 | Colicin E immunity proteins |
