| Protein: | RIA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1110 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1110] | [1..1110] |
|
|
0.0 | [1..590] | [1..570] |
|
|
0.0 | [1..590] | [1..570] |
|
|
0.0 | [8..590] | [1..565] |
|
|
0.0 | [1..590] | [1..567] |
|
|
0.0 | [8..590] | [1..563] |
|
Region A: Residues: [1-372] |
1 11 21 31 41 51
| | | | | |
1 MPRVESETYK RLQNDPSCIR NICIVAHVDH GKTSLSDSLL ASNGIISQRL AGKIRFLDAR 60
61 PDEQLRGITM ESSAISLYFR VLRKQEGSDE PLVSEHLVNL IDSPGHIDFS SEVSAASRLC 120
121 DGAVVLVDVV EGVCSQTVTV LRQCWTEKLK PILVLNKIDR LITELQLTPQ EAYIHLSKVI 180
181 EQVNSVIGSF FANERQLDDL FWREQLEKNE NAEYIEKDDS GIYFNPTDNN VIFASAIDGW 240
241 GFNIGQLAKF YEQKLGAKRE NLQKVLWGDF YMDPKTKKII NNKGLKGRSL KPLFTSLILE 300
301 NIWKIYQNII TSRDSEMVEK IAKTLNIKLL ARDLRSKDDK QLLRTIMGQW LPVSTAVLLT 360
361 VIEKLPSPLE SQ
|
| Detection Method: |  |
| Confidence: | 282.0 |
| Match: | 1dar__ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [373-528] |
1 11 21 31 41 51
| | | | | |
1 TDRLNTILVS ESDTAAMDPR LLKAMKTCDK EGPVSAYVSK MLSIPREELP VESKRIASSD 60
61 ELMERSRKAR EEALNAAKHA GMVENMAMMD LNDNSKNTSD LYKRAKDTVM TPEVGEQTKP 120
121 KPSRNNDVFC VVSEPSSALD LEFEYEGEDD SDSQDN
|
| Detection Method: | |
| Confidence: | 282.0 |
| Match: | 1dar__ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 4.9869754621766 | bayes_pls_golite062009 |
| structural molecule activity | 4.395910578613 | bayes_pls_golite062009 |
| RNA binding | 3.63527713952446 | bayes_pls_golite062009 |
| mRNA binding | 2.41880219271933 | bayes_pls_golite062009 |
| translation elongation factor activity | 2.39615611956381 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 1.46861535960967 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.24602568674916 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20748032530392 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.19859426598543 | bayes_pls_golite062009 |
| nucleic acid binding | 1.13818950871382 | bayes_pls_golite062009 |
| binding | 0.907487229190259 | bayes_pls_golite062009 |
| catalytic activity | 0.878454819018611 | bayes_pls_golite062009 |
| ribonuclease activity | 0.825588323751637 | bayes_pls_golite062009 |
| DNA binding | 0.678913821280306 | bayes_pls_golite062009 |
| nuclease activity | 0.29999921376873 | bayes_pls_golite062009 |
| tRNA-specific ribonuclease activity | 0.249659703226717 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.1757578095579 | bayes_pls_golite062009 |
|
Region A: Residues: [529-726] |
1 11 21 31 41 51
| | | | | |
1 FGLDFVPTDI DPNDPLSSMF EYEEEDPLLE SIKQISEDVN DEVDDIFDEK EECLVAFARI 60
61 YSGTLRVGQE ISVLGPKYDP KCPEEHIETA IITHLYLFMG KELVPLDVCP SGNIVGIRGL 120
121 AGKVLKSGTL IEKGVQGVNL AGVNFHFTPI VRVAVEPANP VEMSKLVRGL KLLDQADPCV 180
181 HTYVENTGEH ILCTAGEL
|
| Detection Method: | |
| Confidence: | 282.0 |
| Match: | 1dar__ |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [727-974] |
1 11 21 31 41 51
| | | | | |
1 HLERCLKDLT ERFAGIEITH SEPAIPYRET FLSASDMNPP QNSQLGRGVH ELLLSQYKIT 60
61 FRTFPLSGKV TDFLSQHQNS IKNILKTSTS SMDPVIESTG SSFLDKKSLL VAFEEVINQE 120
121 EKSRELLSGF KVKLAGFGPS RVGCNILLSQ DNLLGSLFEG TPAAFEYSDS IKNGFQLAVS 180
181 EGPLANEPVQ GMCVLVESVH KMSQDEIESI EDPRYQQHIV DLSGRLITST RDAIHEAFLD 240
241 WSPRIMWA
|
| Detection Method: | |
| Confidence: | 9.99 |
| Match: | 1efgA |
| Description: | Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [975-1047] |
1 11 21 31 41 51
| | | | | |
1 IYSCDIQTSV DVLGKVYAVI LQRHGKIISE EMKEGTPFFQ IEAHVPVVEA FGLSEDIRKR 60
61 TSGAAQPQLV FSG
|
| Detection Method: | |
| Confidence: | 20.045757 |
| Match: | 1jqsC_ |
| Description: | 70S ribosome functional complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1048-1110] |
1 11 21 31 41 51
| | | | | |
1 FECIDLDPFW VPTTEEELEE LGDTADRENI ARKHMNAIRR RKGLFIEEKV VENAEKQRTL 60
61 KKN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
