| Protein: | ALF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 254 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALF1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-70 | [1..254] | [1..254] |
|
|
4.0E-66 | [2..244] | [11..244] |
|
|
3.0E-57 | [2..254] | [4..240] |
|
|
1.0E-54 | [2..238] | [4..229] |
|
|
2.0E-54 | [17..245] | [283..502] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MVRVVIESEL VRTEKELPNS LKLRQFKDRL YHVTGVEPED MEIVVKRQYD NKEIYSTKKG 60
61 GAYSNEDEDA NFLKGEEELI VVVTDSNAQS ISNQLATQAE GIPSMEVISE EDYLRRDQSV 120
121 LRWKMAHGYG RFNAAQQSQR AA
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.284 | 0.257 | post-chaperonin tubulin folding pathway | d.15.1 | Ubiquitin-like |
| View | Download | 0.305 | 0.094 | post-chaperonin tubulin folding pathway | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.228 | 0.035 | post-chaperonin tubulin folding pathway | a.11.2 | Second domain of FERM |
| View | Download | 0.226 | 0.010 | post-chaperonin tubulin folding pathway | d.82.2 | Frataxin-like |
| View | Download | 0.420 | N/A | N/A | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| Term | Confidence | Notes |
| binding | 2.19381585790185 | bayes_pls_golite062009 |
| protein binding | 1.17197911794381 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.599634454232833 | bayes_pls_golite062009 |
| structural molecule activity | 0.576819726104993 | bayes_pls_golite062009 |
| nucleic acid binding | 0.383121378043805 | bayes_pls_golite062009 |
| DNA binding | 0.0840213088061073 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0485636215870291 | bayes_pls_golite062009 |
|
Region A: Residues: [143-254] |
1 11 21 31 41 51
| | | | | |
1 LAKQDEAYAR EQLTAAIGRH CRVTVDGSAP REAILRYVGP LPLDVMGTWC GVEFPEAAGK 60
61 NDGRINGVTL FGPVAPGHGS FVRPRAVEIL SKDEESAEVE DVHDDVESDD EI
|
| Detection Method: | |
| Confidence: | 94.221849 |
| Match: | 1lplA_ |
| Description: | Cytoskeleton-associated protein F53F4.3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| tubulin binding | 2.81573953488242 | bayes_pls_golite062009 |
| microtubule binding | 2.67824962486294 | bayes_pls_golite062009 |
| binding | 2.07863891614262 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.95334135428526 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.16043967945651 | bayes_pls_golite062009 |
| protein binding | 0.896264971703612 | bayes_pls_golite062009 |
| nucleic acid binding | 0.625661567957308 | bayes_pls_golite062009 |
| DNA binding | 0.336599045092266 | bayes_pls_golite062009 |
| transcription regulator activity | 0.292990934444865 | bayes_pls_golite062009 |
| catalytic activity | 0.069855517589921 | bayes_pls_golite062009 |
