| Protein: | NOP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 618 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..618] | [1..618] |
|
|
0.0 | [6..580] | [60..634] |
|
|
0.0 | [6..580] | [8..567] |
|
|
0.0 | [6..580] | [47..606] |
|
|
0.0 | [4..613] | [3..607] |
|
|
0.0 | [3..599] | [7..586] |
|
Region A: Residues: [1-215] |
1 11 21 31 41 51
| | | | | |
1 MGSRRHKNKQ AAPPTLEEFQ ARKEKKANRK LEKGKRPSTT QGDEVSDRKK KKSKPFKKSR 60
61 KEEEEVVEED KDLPEVDLEE LSKARKSLFD DEEDDDEAGL VDEELKDEFD LEQEYDYDED 120
121 EDNDAHPIFS DDDDEADLEE LNAQNMEALS KKLDEEEAEE AEEAEMELVE AENMQPRADI 180
181 LPTEEQEEMM AQETPNLTST RTRMIEIVKV LENFK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [216-311] |
1 11 21 31 41 51
| | | | | |
1 TLGAEGRSRG EYVDRLLKDI CEYFGYTPFL AEKLFNLFSP AEAMEFFEAN EIARPITIRT 60
61 NTLKTRRRDL AQTLVNRGVN LQPIGSWTKV GLQIFD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.692 | 0.438 | RNA methyltransferase activity | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.757 | 0.058 | RNA methyltransferase activity | c.23.1 | CheY-like |
| View | Download | 0.731 | 0.032 | RNA methyltransferase activity | c.30.1 | PreATP-grasp domain |
| View | Download | 0.664 | 0.026 | RNA methyltransferase activity | c.95.1 | Thiolase-like |
| View | Download | 0.746 | 0.011 | RNA methyltransferase activity | a.60.2 | RuvA domain 2-like |
| View | Download | 0.524 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.484 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.441 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.417 | N/A | N/A | d.68.5 | C-terminal domain of ProRS |
| View | Download | 0.403 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.402 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.392 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.376 | N/A | N/A | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.376 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.350 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.342 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.336 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.313 | N/A | N/A | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.307 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.305 | N/A | N/A | c.52.2 | tRNA splicing endonuclease, C-terminal domain |
| View | Download | 0.305 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.279 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.275 | N/A | N/A | d.120.1 | Cytochrome b5 |
| View | Download | 0.272 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.270 | N/A | N/A | d.68.7 | R3H domain |
| View | Download | 0.268 | N/A | N/A | a.138.1 | Multiheme cytochromes |
| View | Download | 0.266 | N/A | N/A | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.264 | N/A | N/A | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.264 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.262 | N/A | N/A | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.260 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.259 | N/A | N/A | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.247 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.244 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.243 | N/A | N/A | d.68.3 | SirA-like |
| View | Download | 0.233 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.232 | N/A | N/A | d.58.2 | Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |
| View | Download | 0.231 | N/A | N/A | d.79.3 | L30e-like |
| View | Download | 0.227 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.225 | N/A | N/A | c.55.5 | MTH1175-like |
| View | Download | 0.223 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.218 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.215 | N/A | N/A | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.211 | N/A | N/A | c.46.1 | Rhodanese/Cell cycle control phosphatase |
| View | Download | 0.211 | N/A | N/A | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.211 | N/A | N/A | c.33.1 | Cysteine hydrolase |
| View | Download | 0.204 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
|
Region A: Residues: [312-618] |
1 11 21 31 41 51
| | | | | |
1 SQVPIGATPE YLAGHYILQA ASSFLPVIAL DPHENERILD MAAAPGGKTT YISAMMKNTG 60
61 CVFANDANKS RTKSLIANIH RLGCTNTIVC NYDAREFPKV IGGFDRILLD APCSGTGVIG 120
121 KDQSVKVSRT EKDFIQIPHL QKQLLLSAID SVDCNSKHGG VIVYSTCSVA VEEDEAVIDY 180
181 ALRKRPNVKL VDTGLAIGKE AFTSYRGKKF HPSVKLARRY YPHTYNVDGF FVAKFQKIGP 240
241 SSFDDNQASA KEKETAARKE ALEEGIIHSD FATFEDEEDD KYIEKSVKNN LLKKGVNPKA 300
301 KRPSNEK
|
| Detection Method: | |
| Confidence: | 270.917458 |
| Match: | 1j4fA_ |
| Description: | No description for 1j4fA_ was found. |
| Term | Confidence | Notes |
| rRNA (guanine) methyltransferase activity | 3.42580501977103 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 3.15840198589582 | bayes_pls_golite062009 |
| methyltransferase activity | 3.08059259177729 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 2.99781997782052 | bayes_pls_golite062009 |
| rRNA methyltransferase activity | 2.89157295612945 | bayes_pls_golite062009 |
| RNA methyltransferase activity | 2.57273894921779 | bayes_pls_golite062009 |
| N-methyltransferase activity | 2.26670816231281 | bayes_pls_golite062009 |
| RNA binding | 1.99752836873461 | bayes_pls_golite062009 |
| tRNA methyltransferase activity | 1.55242772787972 | bayes_pls_golite062009 |
| catalytic activity | 1.25333584501255 | bayes_pls_golite062009 |
| transferase activity | 1.07321114919891 | bayes_pls_golite062009 |
| rRNA (adenine) methyltransferase activity | 1.03293084629981 | bayes_pls_golite062009 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 0.954020631547781 | bayes_pls_golite062009 |
| transcription regulator activity | 0.914549843668268 | bayes_pls_golite062009 |
| DNA binding | 0.86027591375666 | bayes_pls_golite062009 |
| rRNA (uridine) methyltransferase activity | 0.742142092552002 | bayes_pls_golite062009 |
| nucleic acid binding | 0.616949327277483 | bayes_pls_golite062009 |
| binding | 0.383237930789959 | bayes_pls_golite062009 |
| rRNA (uridine-2'-O-)-methyltransferase activity | 0.15443733645953 | bayes_pls_golite062009 |
| mRNA binding | 0.0540207721800283 | bayes_pls_golite062009 |
| snoRNA binding | 0.00848192089639488 | bayes_pls_golite062009 |
