| Protein: | SFB2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 876 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFB2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [15..876] | [272..1078] |
|
|
0.0 | [2..875] | [87..925] |
|
|
0.0 | [2..875] | [274..1092] |
|
|
0.0 | [107..839] | [9..754] |
|
Region A: Residues: [1-215] |
1 11 21 31 41 51
| | | | | |
1 MSHHKKRVYP QAQVPYIASM PIVAEQQQSQ QQIDQTAYAM GNLQLNNRAN SFTQLAQNQQ 60
61 FPGSGKVVNQ LYPVDLFTEL PPPIRDLSLP PLPITISQDN IVTPSEYSNV PYQYVRSTLK 120
121 AVPKTNSLLK KTKLPFAIVI RPYLHLQDSD NQVPLNTDGV IVRCRRCRSY MNPFVVFINQ 180
181 GRKWQCNICR FKNDVPFGFD QNLQGAPINR YERNE
|
| Detection Method: |  |
| Confidence: | 9.57 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.9315281375853 | bayes_pls_golite062009 |
| binding | 1.90456497151578 | bayes_pls_golite062009 |
| transporter activity | 1.30184925420876 | bayes_pls_golite062009 |
| collagen binding | 0.568860931913098 | bayes_pls_golite062009 |
| integrin binding | 0.56855067092085 | bayes_pls_golite062009 |
| nucleic acid binding | 0.464562340940318 | bayes_pls_golite062009 |
| protein complex binding | 0.35582708645524 | bayes_pls_golite062009 |
| DNA binding | 0.155617838235236 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0661625326929309 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.027305897174472 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0179622467180781 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0153681945260867 | bayes_pls_golite062009 |
|
Region A: Residues: [216-543] |
1 11 21 31 41 51
| | | | | |
1 IKNSVVDYLA PVEYSVREPP PSVYVFLLDV SQNAVKNGLL ATSARTILEN IEFLPNHDGR 60
61 TRIAIICVDH SLHYFYVPLD DDYEVSDEDD EESDGEEEDE DEEEEDVDNS ETIQMFDIGD 120
121 LDEPFLPMPS DELVVPLKYC KNNLETLLKK IPEIFQDTHS SKFALGPALK AASNLIKSTG 180
181 GKVEVISSTL PNTGIGKLKK RSEQGILNTP KESSQLLSCK DSFYKTFTIE CNKLQITVDM 240
241 FLASEDYMDV ATLSHLGRFS GGQTHFYPGF NATSLNDVTK FTRELSRHLS MDISMEAVMR 300
301 VRCSTGLRAT SFFGHFFNRS SDLCAFST
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1fe8A |
| Description: | von Willebrand factor A3 domain, vWA3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [544-728] |
1 11 21 31 41 51
| | | | | |
1 MPRDQSYLFG ISIEDSLMAE YCYLQVSTLL TLNTGERRIR VMTLALPTSE SAREVFASAD 60
61 QLAITDFMTQ NAVTKALNSS MYSARDFITK SLEDILNAYK KEISMSNINS VTSLNLCANL 120
121 RMLPLLMNGL SKHIALRPGV VPSDYRASAL NRLETEPLHY LIKSIYPTVY SLHDMPDEVG 180
181 LPDFE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [729-793] |
1 11 21 31 41 51
| | | | | |
1 GKTVLPEPIN ATISLFERYG LYLIDNSAEL FLWVGGDAVP ELLIDVFNTD TISQIPVGKS 60
61 ELPLL
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1svq__ |
| Description: | Severin, domain 2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [794-876] |
1 11 21 31 41 51
| | | | | |
1 NDSPFNERLR RIIGRIRENN DTITFQSLYI IRGPSINEPA NLNSEKDMAS LRLWVLSTLV 60
61 EDKVLNCASY REYLQSMKTS INR
|
| Detection Method: | |
| Confidence: | 11.02 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
