| Protein: | YME2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 850 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YME2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [59..850] | [32..767] |
|
|
0.0 | [1..850] | [1..850] |
|
|
7.0E-30 | [43..126] | [48..129] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MLLVRTTSLN VSRMPVPCLA RGIGILKGKY RLANLMNAQP SVRHVSSEIQ QKDQQAGESN 60
61 TATDTGVIHK SDEETLIYFD NVYARTTSVW NPTLWYNLLL RNQSRDAVRE KIRNLASPPN 120
121 NPIYGLELKS TIPVKRDGGV FATFVVPPKY TKAQVNSLIQ QNTARESSKN LLSYFTRA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.9031259408875 | bayes_pls_golite062009 |
| nucleic acid binding | 1.49187911603143 | bayes_pls_golite062009 |
| protein binding | 1.26544376923141 | bayes_pls_golite062009 |
| RNA binding | 0.772790649151098 | bayes_pls_golite062009 |
| mRNA binding | 0.0666883120942833 | bayes_pls_golite062009 |
|
Region A: Residues: [179-336] |
1 11 21 31 41 51
| | | | | |
1 SAFPVKGSPW IEDLRRLPST TIVIKFQGPA LTEEEIYSLF RRYGTIIDIF PPTAANNNVA 60
61 KVRYRSFRGA ISAKNCVSGI EIHNTVLHIQ YENIRRGHLV SNFFTNHTRI AIPVLFALLS 120
121 IFAVLVFDPI REFSIEQKIT HKYSLSWDNK FWKQLKTL
|
| Detection Method: | |
| Confidence: | 9.552842 |
| Match: | PF00076 |
| Description: | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [337-850] |
1 11 21 31 41 51
| | | | | |
1 TSSTMTSIKY YWGGPDDNHQ RKHLWEERIE KVNDLKMWLE ENNNTFVVIR GPRGSGKHDL 60
61 VMQHTLQNRA NVLYLDCDKL IKSRTDPMFL KNAASQLGYF PIFPWIDSVT GVLDLTVQGL 120
121 TGQKTGLSET KESRFRNMLT TSLMSIRRIA LKNYKAFVST GDGTVNVKEE DYLQQHPEAK 180
181 PVIVIDRFEG KSEINGFVYK ELSDWAAMLV QMNIAHVIFL TETVASNQRL SESLPNQVFK 240
241 NLILSDASKE NSRNYVLSQL EDYLYYNKKS KGENVKEPES EKETAENNDS DSEADTSVKK 300
301 AEVILNEKEL QEIDASLEPL GGRMLDLQAF VRRVKSGEEP SEAVDKMIEQ ASEQITQMFL 360
361 SDKIDSNKSA QAWELIELLS ANPVIPFHEI VNKPLFKAAP ETGIMELENN GLITVSRDRG 420
421 VLQEIRPAKP LYRAAFTYLI NDPELAKVLK TRYLLKVVGF ETGRIKKWEE ELKPLGKVPD 480
481 QKLFKTRLDY LSGKINASNA VITKCEEEIK NLSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [636-850] |
1 11 21 31 41 51
| | | | | |
1 KAEVILNEKE LQEIDASLEP LGGRMLDLQA FVRRVKSGEE PSEAVDKMIE QASEQITQMF 60
61 LSDKIDSNKS AQAWELIELL SANPVIPFHE IVNKPLFKAA PETGIMELEN NGLITVSRDR 120
121 GVLQEIRPAK PLYRAAFTYL INDPELAKVL KTRYLLKVVG FETGRIKKWE EELKPLGKVP 180
181 DQKLFKTRLD YLSGKINASN AVITKCEEEI KNLSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
