| Protein: | RNH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 348 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNH1.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-94 | [45..347] | [450..712] |
|
Region A: Residues: [1-47] |
1 11 21 31 41 51
| | | | | |
1 MARQGNFYAV RKGRETGIYN TWNECKNQVD GYGGAIYKKF NSYEQAK
|
| Detection Method: |  |
| Confidence: | 205.190949 |
| Match: | 1qhkA_ |
| Description: | N-terminal domain of RNase HI |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ribonuclease activity | 4.81599779544001 | bayes_pls_golite062009 |
| exoribonuclease activity | 3.01417328311605 | bayes_pls_golite062009 |
| ribonuclease H activity | 2.91966688044755 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 2.89077854960958 | bayes_pls_golite062009 |
| nuclease activity | 2.65398446409354 | bayes_pls_golite062009 |
| endonuclease activity | 2.63074055051349 | bayes_pls_golite062009 |
| endoribonuclease activity | 2.59247838057313 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 2.57498413015114 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 2.49957333962564 | bayes_pls_golite062009 |
| hydrolase activity | 2.41899414621161 | bayes_pls_golite062009 |
| exonuclease activity | 1.4327316829508 | bayes_pls_golite062009 |
| catalytic activity | 1.25233849524628 | bayes_pls_golite062009 |
| nucleic acid binding | 1.23371034593624 | bayes_pls_golite062009 |
| binding | 1.20709976964365 | bayes_pls_golite062009 |
| transcription regulator activity | 1.10433412699603 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.86862629020506 | bayes_pls_golite062009 |
| DNA binding | 0.860359347662869 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.708753843279937 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.598360955770972 | bayes_pls_golite062009 |
| exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.389326716045122 | bayes_pls_golite062009 |
| transcription factor activity | 0.332903382446869 | bayes_pls_golite062009 |
| protein binding | 0.242714557118293 | bayes_pls_golite062009 |
|
Region A: Residues: [48-175] |
1 11 21 31 41 51
| | | | | |
1 SFLGQPNTTS NYGSSTHAGG QVSKPHTTQK RVHRRNRPLH YSSLTSSSAC SSLSSANTNT 60
61 FYSVKSNVPN IESKIFNNWK DCQAYVKHKR GITFKKFEDQ LAAENFISGM SAHDYKLMNI 120
121 SKESFESK
|
| Detection Method: | |
| Confidence: | 87.69897 |
| Match: | 1rt3A_ |
| Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [176-348] |
1 11 21 31 41 51
| | | | | |
1 YKLSSNTMYN KSMNVYCDGS SFGNGTSSSR AGYGAYFEGA PEENISEPLL SGAQTNNRAE 60
61 IEAVSEALKK IWEKLTNEKE KVNYQIKTDS EYVTKLLNDR YMTYDNKKLE GLPNSDLIVP 120
121 LVQRFVKVKK YYELNKECFK NNGKFQIEWV KGHDGDPGNE MADFLAKKGA SRR
|
| Detection Method: | |
| Confidence: | 87.69897 |
| Match: | 1rt3A_ |
| Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
| Matching Structure (courtesy of the PDB): |
|
