| Protein: | CLN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 546 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLN1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..546] | [1..546] |
|
|
3.0E-95 | [4..342] | [127..424] |
|
|
3.0E-94 | [4..353] | [163..463] |
|
|
9.0E-94 | [4..340] | [127..422] |
|
|
5.0E-93 | [4..353] | [163..465] |
|
|
3.0E-92 | [4..332] | [158..440] |
|
|
7.0E-92 | [4..332] | [163..446] |
|
Region A: Residues: [1-48] |
1 11 21 31 41 51
| | | | | |
1 MNHSEVKTGL IVTAKQTYYP IELSNAELLT HYETIQEYHE EISQNVLV
|
|
Region B: Residues: [197-386] |
1 11 21 31 41 51
| | | | | |
1 INDYILNVDE NCLIQYELYK NQLQNNNSNG KEWSCKRKSQ SSDDSDATVE EHISSSPQST 60
61 GLDGDTTTMD EDEELNSKIK LINLKRFLID LSCWQYNLLK FELYEICNGM FSIINKFTNQ 120
121 DQGPFLSMPI GNDINSNTQT QVFSIIINGI VNSPPSLVEV YKEQYGIVPF ILQVKDYNLE 180
181 LQKKLQLAST
|
| Detection Method: |  |
| Confidence: | 133.09691 |
| Match: | 1vin__ |
| Description: | Cyclin A |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclin-dependent protein kinase regulator activity | 6.12919068656167 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase activity | 3.81462270101479 | bayes_pls_golite062009 |
| protein kinase regulator activity | 2.90083336559452 | bayes_pls_golite062009 |
| kinase regulator activity | 2.84789294954357 | bayes_pls_golite062009 |
| binding | 2.4204867358489 | bayes_pls_golite062009 |
| transcription regulator activity | 1.86024002251052 | bayes_pls_golite062009 |
| protein binding | 1.47106731485576 | bayes_pls_golite062009 |
| nucleic acid binding | 1.23878797237176 | bayes_pls_golite062009 |
| DNA binding | 1.18961617410859 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.07025055509935 | bayes_pls_golite062009 |
| protein kinase activity | 0.957590284872001 | bayes_pls_golite062009 |
| kinase activity | 0.919118452831504 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.806564872314381 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.671643397144957 | bayes_pls_golite062009 |
| hydrolase activity | 0.62079213929979 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.567809158275482 | bayes_pls_golite062009 |
| transcription factor activity | 0.567104149291415 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.56301729141837 | bayes_pls_golite062009 |
| kinase binding | 0.451409627821468 | bayes_pls_golite062009 |
| transcription factor binding | 0.396734044657235 | bayes_pls_golite062009 |
| enzyme binding | 0.145967754156613 | bayes_pls_golite062009 |
|
Region A: Residues: [49-196] |
1 11 21 31 41 51
| | | | | |
1 QSSKTKPDIK LIDQQPEMNP HQTREAIVTF LYQLSVMTRV SNGIFFHAVR FYDRYCSKRV 60
61 VLKDQAKLVV GTCLWLAAKT WGGCNHIINN VSIPTGGRFY GPNPRARIPR LSELVHYCGG 120
121 SDLFDESMFI QMERHILDTL NWDVYEPM
|
| Detection Method: | |
| Confidence: | 133.09691 |
| Match: | 1vin__ |
| Description: | Cyclin A |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [387-546] |
1 11 21 31 41 51
| | | | | |
1 IDLTRKIAVN SRYFDQNASS SSVSSPSTYS SGTNYTPMRN FSAQSDNSVF STTNIDHSSP 60
61 ITPHMYTFNQ FKNESACDSA ISVSSLPNQT QNGNMPLSSN YQNMMLEERN KENRIPNSSS 120
121 AEIPQRAKFM TTGIFQNTGE LTNRASSISL SLRNHNSSQL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
