| Protein: | RRB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 511 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [8..510] | [807..1250] |
|
|
0.0 | [33..510] | [898..1357] |
|
|
1.0E-98 | [1..511] | [1..511] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MSKRSIEVNE EQDRVVSAKT ESHSVPAIPA SEEQDAPKND LEEQLSDEFD SDGEIIEIDG 60
61 DDEINDEDDL RKKQEEAETL VQKDQSEGNK EKIQELYLPH MSRPLGPDEV LEADPTVYEM 120
121 LHNVNMPWPC LTLDVIPDTL GSERRNYPQS ILLTTATQSS RKKENELMVL ALSNLAKTLL 180
181 K
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| histone methyltransferase activity (H3-K4 specific) | 4.71992275913384 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.79445416141967 | bayes_pls_golite062009 |
| snoRNA binding | 2.62514080753887 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 2.18628561734369 | bayes_pls_golite062009 |
| histone methyltransferase activity | 1.85632145559025 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| dynein binding | 1.62099593211487 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| protein methyltransferase activity | 1.35170368882651 | bayes_pls_golite062009 |
| acetyltransferase activity | 1.23134876981279 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19593750149343 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| transcription initiation factor activity | 1.01962930136588 | bayes_pls_golite062009 |
| 0.88172763425403 | bayes_pls_golite062009 | |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.676924760416604 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.625780732991652 | bayes_pls_golite062009 |
| actin binding | 0.529861581509437 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 0.437810477160064 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.428715007921149 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.426429095658617 | bayes_pls_golite062009 |
| kinase activity | 0.387572734234845 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| transporter activity | 0.284701931503833 | bayes_pls_golite062009 |
| structural molecule activity | 0.254012051644049 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.226335610368636 | bayes_pls_golite062009 |
| DNA helicase activity | 0.220747580531792 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.161639372576406 | bayes_pls_golite062009 |
| chromatin binding | 0.151977098745772 | bayes_pls_golite062009 |
| N-methyltransferase activity | 0.00335766408304172 | bayes_pls_golite062009 |
|
Region A: Residues: [182-511] |
1 11 21 31 41 51
| | | | | |
1 DDNEGEDDEE DDEDDVDPVI ENENIPLRDT TNRLKVSPFA ISNQEVLTAT MSENGDVYIY 60
61 NLAPQSKAFS TPGYQIPKSA KRPIHTVKNH GNVEGYGLDW SPLIKTGALL SGDCSGQIYF 120
121 TQRHTSRWVT DKQPFTVSNN KSIEDIQWSR TESTVFATAG CDGYIRIWDT RSKKHKPAIS 180
181 VKASNTDVNV ISWSDKIGYL LASGDDNGTW GVWDLRQFTP SNADAVQPVA QYDFHKGAIT 240
241 SIAFNPLDES IVAVGSEDNT VTLWDLSVEA DDEEIKQQAA ETKELQEIPP QLLFVHWQKE 300
301 VKDVKWHKQI PGCLVSTGTD GLNVWKTISV
|
| Detection Method: | |
| Confidence: | 87.70927 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
