| Protein: | UBX4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 416 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..416] | [1..416] |
|
|
3.0E-44 | [152..413] | [250..548] |
|
|
2.0E-42 | [130..413] | [249..545] |
|
|
1.0E-35 | [126..353] | [246..480] |
|
|
1.0E-35 | [126..353] | [232..466] |
|
Region A: Residues: [1-126] |
1 11 21 31 41 51
| | | | | |
1 MPMVTVKYNF QLFKCKVSLN STLNDVLHQS IQFFQLHTSS NDWSLIHLDK PVPLDLPWRL 60
61 LNLPTGVNLE LSKSSNFPVA NKTNREDIPF NTIKIRFQIP GRDSVVKEMP SDQPIAPILR 120
121 QMSGAA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.296 | d.26.1 | FKBP-like |
| View | Download | 0.295 | c.55.3 | Ribonuclease H-like |
| View | Download | 0.397 | d.110.4 | SNARE-like |
| View | Download | 0.345 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.286 | a.95.1 | Influenza virus matrix protein M1 |
| View | Download | 0.286 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.282 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.269 | c.114.1 | YchN-like |
| View | Download | 0.249 | d.15.1 | Ubiquitin-like |
| View | Download | 0.206 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.206 | c.47.1 | Thioredoxin-like |
| View | Download | 0.204 | d.94.1 | HPr-like |
| View | Download | 0.203 | b.80.3 | Cell-division inhibitor MinC, C-terminal domain |
| Term | Confidence | Notes |
| binding | 2.11588141989606 | bayes_pls_golite062009 |
| protein binding | 1.75262085947538 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.64626529520014 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.03640529353043 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.778769490362734 | bayes_pls_golite062009 |
| nucleic acid binding | 0.406724367405638 | bayes_pls_golite062009 |
| hydrolase activity | 0.266557627363523 | bayes_pls_golite062009 |
| DNA binding | 0.102021710653816 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0672274772804511 | bayes_pls_golite062009 |
|
Region A: Residues: [127-225] |
1 11 21 31 41 51
| | | | | |
1 GDDFKIQVFS KIIEFKTIKD ENLTLENLGI QEPSSVRLIF NNTSHSEGIS ANSAIHPKQT 60
61 PPTMTNPETV ASLPPHELHK PSVFLPSDEP LAVIKDQIE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.293 | 0.000 | nucleus | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
| View | Download | 0.380 | 0.000 | nucleus | b.114.1 | N-utilization substance G protein NusG, insert domain |
|
Region A: Residues: [226-416] |
1 11 21 31 41 51
| | | | | |
1 DEEDYELTVE QAKKYQKMLS SKAGTLGGPI LTKRLREQSA NNLPKKNKAI SECLLRVKFP 60
61 DRSHIQIAFK PNEDMRTVYN VVSQFLIDEN MPFTLNQSHP FKPLAKDDKK LLDDLEFGSK 120
121 TMLLFETNSN SNGPLIKAHL LEDAQKITHE TRTTPSVNTI NKSNPQGPSD NATSIKKTLN 180
181 RVPKWMKLSK K
|
| Detection Method: | |
| Confidence: | 17.522879 |
| Match: | 1jruA_ |
| Description: | p47 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.19381585790185 | bayes_pls_golite062009 |
| protein binding | 1.89134588490127 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.83465130904364 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.16468510691469 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.919595189902044 | bayes_pls_golite062009 |
| nucleic acid binding | 0.383121378043805 | bayes_pls_golite062009 |
| hydrolase activity | 0.247201449341942 | bayes_pls_golite062009 |
| DNA binding | 0.0840213088061073 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0485636215870291 | bayes_pls_golite062009 |
