| Protein: | STB4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 949 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STB4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..949] | [1..949] |
|
|
1.0E-43 | [36..335] | [2..292] |
|
|
4.0E-38 | [33..314] | [17..337] |
|
|
5.0E-37 | [38..325] | [21..285] |
|
|
2.0E-35 | [51..314] | [1..305] |
|
|
8.0E-34 | [36..332] | [1..306] |
|
|
1.0E-32 | [36..260] | [1..220] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MSINHEIYYI LVFEHRSVAI KLIIVVIVLL QFFLARSRQI DRTWAHTNRK ERFREMTAIG 60
61 NTDDALD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.449 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.385 | d.110.4 | SNARE-like |
| View | Download | 0.634 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.595 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.488 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.634 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.595 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.488 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.451 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.449 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.384 | a.112.1 | Description not found. |
| View | Download | 0.341 | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.318 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.312 | d.110.4 | SNARE-like |
| View | Download | 0.305 | a.3.1 | Cytochrome c |
| View | Download | 0.300 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.273 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.271 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.267 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.261 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.252 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.250 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.247 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.247 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.246 | d.6.1 | Prion-like |
| View | Download | 0.245 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.240 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.216 | a.22.1 | Histone-fold |
| View | Download | 0.209 | a.39.1 | EF-hand |
| View | Download | 0.208 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.207 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.200 | d.80.1 | Tautomerase/MIF |
|
Region A: Residues: [68-222] |
1 11 21 31 41 51
| | | | | |
1 TSTAASKENG KGRLRVQKAC ELCKKRKVKC DGNNPCLNCS KHQKECRYDF KATNRKRRRR 60
61 QVASAVRDVS KTYAETSESF PRDLLSKSNI IINAPSDGVS SSASNSPNPN SHYHHISSTL 120
121 PFMSGRPNHT FHSGSNLNGE NNNNSFPEDH MAKLL
|
| Detection Method: | |
| Confidence: | 13.522879 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 1.82012686871762 | bayes_pls_golite062009 |
| DNA binding | 1.78629392205727 | bayes_pls_golite062009 |
| binding | 1.76935935681721 | bayes_pls_golite062009 |
| transcription regulator activity | 1.70162817919532 | bayes_pls_golite062009 |
| transcription factor activity | 0.606922041618269 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.160255273911114 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0882387940255902 | bayes_pls_golite062009 |
|
Region A: Residues: [223-949] |
1 11 21 31 41 51
| | | | | |
1 LQLSSKLGNT TKESSIRTTR TNASDVNANP TVVNMKNSQE DCDTNHRSAI CDSAEALHNN 60
61 NINSKENKII NSQITNTVND HFESPWQTFS LDKYRFHRRY QNILPYYLGV SILKDLSPQT 120
121 IEYAKLKRPR VQNYGWNLSG GHYLKYKGDF RSQEKNIRHE SKFFDFDDPV HLSLINKLLR 180
181 YYFDEINPVF SIIHEATFWQ QYNNKFLRQG KQNNSSANLF TSMLYLILST TLRFREGHLD 240
241 GQKGQGTYSN TSLNITFEEK SILIKKPSIE ENLFKYAYLI INTLTFEWES FELIQSWLLI 300
301 TFYFRTCYRQ TACWNALSQA VNMCNGMSLY LNKFPEIHST YDESKAWHCF WCCFIMDKLI 360
361 SFQMGRFYQL SLPASEMCEQ MNLVKSKKFL QEEDDWFHEE TFQMLDLSII VTQFLKRDAQ 420
421 DLNLNETVQL RSQLGQWYDT FIVGSQTNAY DDNYRYFYQV QPFMTYLDIR LTFEVRQLFC 480
481 LIAPSSTANN KSLEYVVDTE LLISHCQMAI ENLAEITRSN LFFVPWWLNL SQLFTVNLIC 540
541 IIYLHAGIAV TQNKAIMQSC QEIWRTLECS KPKNRPSMLP ECLWCLKMLN HMFCIRLRDS 600
601 ALQLEATLGT DHGDDTPNRN KFEQFKKVGD NDADVEVDAG EREENADERQ ENPHNNSKRV 660
661 PLATRSHNTT NFDGSIAISP ESAVANLGTD TGLPSDVLDT VSKIGNSPNV FDDDLFSNLL 720
721 WFDQNFA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [245-369] |
1 11 21 31 41 51
| | | | | |
1 ASDVNANPTV VNMKNSQEDC DTNHRSAICD SAEALHNNNI NSKENKIINS QITNTVNDHF 60
61 ESPWQTFSLD KYRFHRRYQN ILPYYLGVSI LKDLSPQTIE YAKLKRPRVQ NYGWNLSGGH 120
121 YLKYK
|
| Detection Method: | |
| Confidence: | 2.25 |
| Match: | 1pyiA |
| Description: | PPR1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.67816066599632 | bayes_pls_golite062009 |
| nucleic acid binding | 1.62620944167363 | bayes_pls_golite062009 |
| DNA binding | 1.56468711383438 | bayes_pls_golite062009 |
| transcription regulator activity | 1.48580372603095 | bayes_pls_golite062009 |
| transcription factor activity | 0.430971106781157 | bayes_pls_golite062009 |
|
Region A: Residues: [370-460] |
1 11 21 31 41 51
| | | | | |
1 GDFRSQEKNI RHESKFFDFD DPVHLSLINK LLRYYFDEIN PVFSIIHEAT FWQQYNNKFL 60
61 RQGKQNNSSA NLFTSMLYLI LSTTLRFREG H
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [461-669] |
1 11 21 31 41 51
| | | | | |
1 LDGQKGQGTY SNTSLNITFE EKSILIKKPS IEENLFKYAY LIINTLTFEW ESFELIQSWL 60
61 LITFYFRTCY RQTACWNALS QAVNMCNGMS LYLNKFPEIH STYDESKAWH CFWCCFIMDK 120
121 LISFQMGRFY QLSLPASEMC EQMNLVKSKK FLQEEDDWFH EETFQMLDLS IIVTQFLKRD 180
181 AQDLNLNETV QLRSQLGQWY DTFIVGSQT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [670-837] |
1 11 21 31 41 51
| | | | | |
1 NAYDDNYRYF YQVQPFMTYL DIRLTFEVRQ LFCLIAPSST ANNKSLEYVV DTELLISHCQ 60
61 MAIENLAEIT RSNLFFVPWW LNLSQLFTVN LICIIYLHAG IAVTQNKAIM QSCQEIWRTL 120
121 ECSKPKNRPS MLPECLWCLK MLNHMFCIRL RDSALQLEAT LGTDHGDD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [838-949] |
1 11 21 31 41 51
| | | | | |
1 TPNRNKFEQF KKVGDNDADV EVDAGEREEN ADERQENPHN NSKRVPLATR SHNTTNFDGS 60
61 IAISPESAVA NLGTDTGLPS DVLDTVSKIG NSPNVFDDDL FSNLLWFDQN FA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
