| Protein: | TAF4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 388 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..388] | [1..388] |
|
|
0.0 | [15..386] | [329..693] |
|
|
1.0E-78 | [59..388] | [1..365] |
|
|
7.0E-76 | [23..385] | [549..921] |
|
|
2.0E-70 | [4..384] | [244..659] |
|
|
5.0E-70 | [6..385] | [676..1083] |
|
|
1.0E-68 | [2..386] | [257..684] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MANSPKKPSD GTGVSASDTP KYQHTVPETK PAFNLSPGKA SELSHSLPSP SQIKSTAHVS 60
61 STHNDAAGNT DDSVLPKNVS PTTNLRVESN GDTNNM
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.286 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.400 | a.145.1 | Flagellar transcriptional activator FlhD |
| View | Download | 0.305 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.288 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.477 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.258 | a.3.1 | Cytochrome c |
| View | Download | 0.231 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.204 | a.1.1 | Globin-like |
| View | Download | 0.201 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [97-318] |
1 11 21 31 41 51
| | | | | |
1 FSSPAGLALP KKDDKKKNKG TSKADSKDGK ASNSSGQNAQ QQSDPNKMQD VLFSAGIDVR 60
61 EEEALLNSSI NASKSQVQTN NVKIPNHLPF LHPEQVSNYM RKVGKEQNFN LTPTKNPEIL 120
121 DMMSSACENY MRDILTNAIV ISRHRRKAVK INSGRRSEVS AALRAIALIQ KKEEERRVKK 180
181 RIALGLEKED YENKIDSEET LHRASNVTAG LRAGSKKQYG WL
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 9.25279783093877 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| transcription initiation factor activity | 3.96621818094279 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.28941584139552 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.10331930589736 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| transcription repressor activity | 0.72554769377984 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0792897588268993 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0736756545988504 | bayes_pls_golite062009 |
|
Region A: Residues: [319-388] |
1 11 21 31 41 51
| | | | | |
1 TSSVNKPTSL GAKSSGKVAS DITARGESGL KFREAREEPG IVMRDLLFAL ENRRNSVQTI 60
61 ISKGYAKIRD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.571 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.583 | d.58.17 | Metal-binding domain |
| View | Download | 0.346 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.316 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.583 | d.58.17 | Metal-binding domain |
| View | Download | 0.571 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.442 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.346 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.343 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.343 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.315 | a.77.1 | DEATH domain |
| View | Download | 0.308 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.304 | d.58.49 | YajQ-like |
| View | Download | 0.301 | a.140.1 | LEM domain |
| View | Download | 0.294 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.283 | a.4.1 | Homeodomain-like |
| View | Download | 0.278 | a.4.1 | Homeodomain-like |
| View | Download | 0.268 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.258 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | d.10.1 | DNA-binding domain |
| View | Download | 0.252 | b.36.1 | PDZ domain-like |
| View | Download | 0.240 | a.64.1 | Saposin |
| View | Download | 0.213 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.212 | g.41.10 | Zn-finger domain of Sec23/24 |
| View | Download | 0.205 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.204 | a.156.1 | S13-like H2TH domain |
