| Protein: | AMD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 810 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..810] | [1..810] |
|
|
0.0 | [51..797] | [48..779] |
|
|
0.0 | [56..797] | [47..774] |
|
|
0.0 | [50..799] | [40..764] |
|
|
0.0 | [43..793] | [99..822] |
|
Region A: Residues: [1-240] |
1 11 21 31 41 51
| | | | | |
1 MDNQATQRLN DLSLEPAPSH DEQDGSGLVI DIDQRKIGDE QAGVVVDDET PPLEQQDSHE 60
61 SLAADSRNAN FSYHENQQLL ENGTKQLALD EHDSHSAILE QPSHSTNCSS SNIAAMNKGH 120
121 DSADHASQNS GGKPRTLSAS AQHILPETLK SFAGAPVVNK QVRTSASYKM GMLADDASQQ 180
181 FLDDPSSELI DLYSKVAECR NLRAKYQTIS VQNDDQNPKN KPGWVVYPPP PKPSYNSDTK 240
241
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| catalytic activity | 1.70199291046899 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.12925526582667 | bayes_pls_golite062009 |
| transcription regulator activity | 0.867179877821333 | bayes_pls_golite062009 |
| nucleic acid binding | 0.784495708118775 | bayes_pls_golite062009 |
| DNA binding | 0.58985393219841 | bayes_pls_golite062009 |
| binding | 0.568044210518453 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | 0.248802326836448 | bayes_pls_golite062009 |
| hydrolase activity | 0.24275130580417 | bayes_pls_golite062009 |
| dihydroorotase activity | 0.203044795244555 | bayes_pls_golite062009 |
| deaminase activity | 0.18698811376434 | bayes_pls_golite062009 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | 0.0954028693917728 | bayes_pls_golite062009 |
|
Region A: Residues: [241-293] |
1 11 21 31 41 51
| | | | | |
1 TVVPVTNKPD AEVFDFTKCE IPGEDPDWEF TLNDDDSYVV HRSGKTDELI AQI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.927 | 0.036 | purine nucleotide metabolic process | g.41.3 | Zinc beta-ribbon |
|
Region A: Residues: [294-562] |
1 11 21 31 41 51
| | | | | |
1 PTLRDYYLDL EKMISISSDG PAKSFAYRRL QYLEARWNLY YLLNEYQETS VSKRNPHRDF 60
61 YNVRKVDTHV HHSACMNQKH LLRFIKHKLR HSKDEKVIFR DGKLLTLDEV FRSLHLTGYD 120
121 LSIDTLDMHA HKDTFHRFDK FNLKYNPIGE SRLREIFLKT NNYIKGTYLA DITKQVIFDL 180
181 ENSKYQNCEY RISVYGRSLD EWDKLASWVI DNKVISHNVR WLVQIPRLYD IYKKTGIVQS 240
241 FQDICKNLFQ PLFEVTKNPQ SHPKLHVFL
|
| Detection Method: | |
| Confidence: | 35.468521 |
| Match: | PF00962 |
| Description: | Adenosine/AMP deaminase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [563-810] |
1 11 21 31 41 51
| | | | | |
1 QRVIGFDSVD DESKVDRRFH RKYPKPSLWE APQNPPYSYY LYYLYSNVAS LNQWRAKRGF 60
61 NTLVLRPHCG EAGDPEHLVS AYLLAHGISH GILLRKVPFV QYLYYLDQVG IAMSPLSNNA 120
121 LFLTYDKNPF PRYFKRGLNV SLSTDDPLQF SYTREPLIEE YSVAAQIYKL SNVDMCELAR 180
181 NSVLQSGWEA QIKKHWIGKD FDKSGVEGND VVRTNVPDIR INYRYDTLST ELELVNHFAN 240
241 FKRTIEEK
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1m7mA_ |
| Description: | No description for 1m7mA_ was found. |
