| Protein: | UBX2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 584 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..571] | [1..571] |
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|
2.0E-99 | [21..505] | [11..492] |
|
|
6.0E-95 | [14..511] | [7..468] |
|
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3.0E-94 | [13..527] | [6..463] |
|
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1.0E-90 | [19..523] | [6..463] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MPVVNHEDSE FHLSHTEEDK LNEFQVITNF PPEDLPDVVR LLRNHGWQLE PALSRYFDGE 60
61 WKGEPDQMGE PTQTSTPMAE TLVPPALGPR PLLFT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.286 | 0.299 | protein secretion | a.1.1 | Globin-like |
| View | Download | 0.308 | 0.187 | protein secretion | d.15.1 | Ubiquitin-like |
| View | Download | 0.369 | 0.044 | protein secretion | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.373 | 0.006 | protein secretion | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.266 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.265 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.247 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.240 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.237 | N/A | N/A | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.236 | N/A | N/A | c.98.1 | MurE/MurF N-terminal domain |
| View | Download | 0.232 | N/A | N/A | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
|
Region A: Residues: [96-182] |
1 11 21 31 41 51
| | | | | |
1 ASLPVVRPLP ANFRNDFRTI GLNGRSNTVW SMFESFSYDG NPFLFILLLI PRIINRLSAT 60
61 IFTFFCTLLS LHSISGGGNS GKPKISK
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.795 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.632 | a.74.1 | Cyclin-like |
| View | Download | 0.730 | a.4.3 | ARID-like |
| View | Download | 0.745 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.717 | a.159.2 | FF domain |
| View | Download | 0.555 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.497 | d.58.25 | Killer toxin KP6 alpha-subunit |
| View | Download | 0.455 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.447 | a.3.1 | Cytochrome c |
| View | Download | 0.427 | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.401 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.391 | a.77.1 | DEATH domain |
| View | Download | 0.380 | a.74.1 | Cyclin-like |
| View | Download | 0.365 | a.39.1 | EF-hand |
| View | Download | 0.365 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.356 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.352 | a.46.1 | Methionine synthase domain |
| View | Download | 0.350 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.349 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.333 | d.64.1 | eIF1-like |
| View | Download | 0.325 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.321 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.314 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.309 | d.192.1 | YlxR-like |
| View | Download | 0.306 | a.77.1 | DEATH domain |
| View | Download | 0.303 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.293 | a.4.3 | ARID-like |
| View | Download | 0.292 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.291 | a.43.1 | Met repressor-like |
| View | Download | 0.289 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.286 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.280 | a.4.1 | Homeodomain-like |
| View | Download | 0.274 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.274 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.271 | a.158.1 | F-box domain |
| View | Download | 0.264 | a.4.1 | Homeodomain-like |
| View | Download | 0.264 | a.77.1 | DEATH domain |
| View | Download | 0.256 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.248 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.247 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.246 | a.3.1 | Cytochrome c |
| View | Download | 0.244 | a.77.1 | DEATH domain |
| View | Download | 0.243 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.241 | a.74.1 | Cyclin-like |
| View | Download | 0.239 | a.3.1 | Cytochrome c |
| View | Download | 0.236 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.236 | a.39.1 | EF-hand |
| View | Download | 0.234 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.231 | a.74.1 | Cyclin-like |
| View | Download | 0.227 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.223 | a.28.1 | ACP-like |
| View | Download | 0.223 | a.4.1 | Homeodomain-like |
| View | Download | 0.221 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.220 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.219 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.219 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.217 | d.58.17 | Metal-binding domain |
| View | Download | 0.216 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.215 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.215 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.214 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.211 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.208 | a.74.1 | Cyclin-like |
| View | Download | 0.207 | a.118.8 | TPR-like |
| View | Download | 0.205 | a.74.1 | Cyclin-like |
| View | Download | 0.204 | a.77.1 | DEATH domain |
| View | Download | 0.203 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.200 | d.58.49 | YajQ-like |
|
Region A: Residues: [183-351] |
1 11 21 31 41 51
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1 VPKAPTRETH IPLAEILGDT KDKDAFCELK SFKPDISFNE ALRIAKEEFK FMLLILVGDT 60
61 YDTDTDTVDV NSKLLLEKIL LNKKTLQYLR KIDNDLIIYL KCVHELEPWL VARQLGVRNT 120
121 PEIFLIANVA NKASHSETLP SQRLSILGKL KVNSLNRFLQ SLTNVVEKY
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| protein disulfide isomerase activity | 2.05206748531532 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity, transposing S-S bonds | 2.05206748531532 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity, interconverting keto- and enol-groups | 1.83987272812734 | bayes_pls_golite062009 |
| intramolecular oxidoreductase activity | 1.5535855642475 | bayes_pls_golite062009 |
| catalytic activity | 0.672192331361968 | bayes_pls_golite062009 |
| protein binding | 0.532751276111804 | bayes_pls_golite062009 |
| hydrolase activity | 0.517269321619613 | bayes_pls_golite062009 |
| binding | 0.235855919597681 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.0866917827040035 | bayes_pls_golite062009 |
|
Region A: Residues: [352-426] |
1 11 21 31 41 51
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1 TPELVVNKTE MHELRMSREI KKLQEDAYKK SLEMDRIKAI EKEKSLKHAQ DLKLNSTARQ 60
61 LKWLKACIDE IQPFE
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 6.3238498800949 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 5.759996473289 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 5.32190918602578 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 4.23828791893907 | bayes_pls_golite062009 |
| protein binding | 2.26682390101852 | bayes_pls_golite062009 |
| ligase activity | 2.25858205355159 | bayes_pls_golite062009 |
| binding | 1.76448263865625 | bayes_pls_golite062009 |
| hydrolase activity | 0.614233748923048 | bayes_pls_golite062009 |
|
Region A: Residues: [427-518] |
1 11 21 31 41 51
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1 TTGKQATLQF RTSSGKRFVK KFPSMTTLYQ IYQSIGCHIY LAVYSSDPAE WSNALQDKIR 60
61 QLSADDDMLC FKEGQLETAT ATTIEELGHI IN
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| Detection Method: | |
| Confidence: | 13.154902 |
| Match: | 1h8cA_ |
| Description: | Fas-assosiated factor 1, Faf1 |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [519-584] |
1 11 21 31 41 51
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1 NELTSFDLER GKLEFDFELV SPFPKYTVHP NEHMSVDQVP QLWPNGSLLV EALDEEDEED 60
61 EENEEQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.677 | a.4.1 | Homeodomain-like |
| View | Download | 0.671 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.676 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.733 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.674 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.651 | a.4.1 | Homeodomain-like |
| View | Download | 0.627 | a.4.1 | Homeodomain-like |
| View | Download | 0.600 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.564 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.549 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.540 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.525 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.515 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.500 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.497 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.489 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.458 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.453 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.430 | a.60.8 | HRDC-like |
| View | Download | 0.428 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.422 | a.112.1 | Description not found. |
| View | Download | 0.410 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.397 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.365 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.343 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.342 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.336 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.332 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.329 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.313 | a.4.1 | Homeodomain-like |
| View | Download | 0.302 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.301 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.300 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.298 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.283 | a.60.8 | HRDC-like |
| View | Download | 0.242 | a.4.1 | Homeodomain-like |
| View | Download | 0.235 | d.93.1 | SH2 domain |
