| Protein: | SEN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 2231 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [49..1961] | [23..1888] |
|
|
0.0 | [107..1857] | [94..1833] |
|
|
0.0 | [1..2231] | [1..2231] |
|
|
0.0 | [836..1961] | [555..1816] |
|
|
0.0 | [1100..1906] | [247..953] |
|
Region A: Residues: [1-1122] |
1 11 21 31 41 51
| | | | | |
1 MNSNNPDNNN SNNINNNNKD KDIAPNSDVQ LATVYTKAKS YIPQIEQVYQ GTNPNIQEAK 60
61 LLGELLQVLA EVPKGTHLFC DPILEPISIF SLTIFSFNEE ATATWLKNHF NPILSVCDKC 120
121 ILNFARGKCK MLQHFAIQRH VPHEHVAKFN DIVCQWRVEA VFPILRNISV NDNTGINITN 180
181 EIETAMYECL CNPHMLRLNK QLKATFEAIF KFFYDTKHRL LDVTNPLSIK TFISGVIFCW 240
241 CEGSKEENEW SRAFLKDLYS RNFHINLSNL TPDIIEEVYI HILFLQNPAN WTEIVVSQFW 300
301 SRLLPVFNLF DKDVFIEYFQ VPKNVESLKK TFKFPLEPIF KMWYNHLSKS YHDKPLDFLL 360
361 RGLTMFLNKF GSEFWSKIEP FTFHSILDII FNRDSFPIKL IKIQDNPIVE HQTEVYFQLT 420
421 GSVTDLLSWT LPFYHALSPS KRIQMVRKVS MAFLRIIANY PSLKSIPKAC LMNSATALLR 480
481 AVLTIKENER AMLYKNDEFE TVLLTKTDSR ALLNNPLIQD IIIRSASNPN DFYPGLGAAS 540
541 ASVATSTMMV LAECIDFDIL LLCHRTFKLY SGKPISEIPI STNVLENVTN KIDLRSFHDG 600
601 PLLAKQLLVS LKNINGLLIV PSNTAVAEAH NALNQKFLLL STRLMEKFAD ILPGQLSKIL 660
661 ADEDASQGFW SCIFSSDKHL YQAATNILYN TFDVEGRLEG ILAILNSNLT VNLKNINVML 720
721 QRLINCEFYE PCPRAVRVLM DVVSAFVDPI SGVFANFQTL KSQNTEKEFL KFWESCWLFL 780
781 DTIYKFTLKW ASKYDYSELE NFTKDTLDLS RSLVDSFREF SDILHDQTKN LLLNVLETFK 840
841 NMLYWLRLSD EVLLESCVRL IISTSDLAHE KHVKVDDSLV EMMAKYASKA KRFSNKLTEQ 900
901 QASEILQKAK IFNKALTEEV ATEAENYRKE KELSRLGKVI DLTDSVPASP SLSPSLSSTI 960
961 ASSSAESRAD YLQRKALSSS ITGRPRVAQP KITSFGTFQS SANAKLHRTK PVKPLSKMEL1020
1021 ARMQLLNNRV VHPPSAPAFH TKSRGLSNKN DDSSSEESDN DIESARELFA IAKAKGKGIQ1080
1081 TVDINGKVVK RQTAAELAKQ ELEHMRKRLN VDMNPLYEII LQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1123-1320] |
1 11 21 31 41 51
| | | | | |
1 WDYTRNSEYP DDEPIGNYSD VKDFFNSPAD YQKVMKPLLL LESWQGLCSS RDREDYKPFS 60
61 IIVGNRTAVS DFYDVYASVA KQVIQDCGIS ESDLIVMAYL PDFRPDKRLS SDDFKKAQHT 120
121 CLAKVRTLKN TKGGNVDVTL RIHRNHSFSK FLTLRSEIYC VKVMQMTTIE REYSTLEGLE 180
181 YYDLVGQILQ AKPSPPVN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1321-1655] |
1 11 21 31 41 51
| | | | | |
1 VDAAEIETVK KSYKLNTSQA EAIVNSVSKE GFSLIQGPPG TGKTKTILGI IGYFLSTKNA 60
61 SSSNVIKVPL EKNSSNTEQL LKKQKILICA PSNAAVDEIC LRLKSGVYDK QGHQFKPQLV 120
121 RVGRSDVVNV AIKDLTLEEL VDKRIGERNY EIRTDPELER KFNNAVTKRR ELRGKLDSES 180
181 GNPESPMSTE DISKLQLKIR ELSKIINELG RDRDEMREKN SVNYRNRDLD RRNAQAHILA 240
241 VSDIICSTLS GSAHDVLATM GIKFDTVIID EACQCTELSS IIPLRYGGKR CIMVGDPNQL 300
301 PPTVLSGAAS NFKYNQSLFV RMEKNSSPYL LDVQY
|
| Detection Method: | |
| Confidence: | 97.154902 |
| Match: | 1pjr__ |
| Description: | DEXX box DNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1656-2033] |
1 11 21 31 41 51
| | | | | |
1 RMHPSISKFP SSEFYQGRLK DGPGMDILNK RPWHQLEPLA PYKFFDIISG RQEQNAKTMS 60
61 YTNMEEIRVA IELVDYLFRK FDNKIDFTGK IGIISPYREQ MQKMRKEFAR YFGGMINKSI 120
121 DFNTIDGFQG QEKEIILISC VRADDTKSSV GFLKDFRRMN VALTRAKTSI WVLGHQRSLA 180
181 KSKLWRDLIE DAKDRSCLAY ACSGFLDPRN NRAQSILRKF NVPVPSEQED DYKLPMEYIT 240
241 QGPDEVKSNK DTKKRRVVDE GEEADKAVKK KKKEKKKEKK KSKADDKKKN NKKAESPSTS 300
301 SGTKKKSSIF GGMSVPSAVV PKTFPDVDSN KKAAAVVGKK KNNKHVCFSD DVSFIPRNDE 360
361 PEIKVTRSLS SVLKEKQL
|
| Detection Method: | |
| Confidence: | 97.154902 |
| Match: | 1pjr__ |
| Description: | DEXX box DNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [2034-2231] |
1 11 21 31 41 51
| | | | | |
1 GLKETRTISP PEISNNEDDD DEDDYTPSIS DSSLMKSEAN GRNNRVASHN QNFSASIYDD 60
61 PQVSQAKQTQ VPAAITKHRS SNSVLSGGSS RILTASDYGE PNQNGQNGAN RTLSQHVGNA 120
121 NQYSTAPVGT GELHETLPAH PQDSYPAEAE DPYDLNPHPQ PQSSAFKGPG SGPTGTRNSS 180
181 RRNASSSPFI PKKRKPRS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [841-1128] |
1 11 21 31 41 51
| | | | | |
1 NMLYWLRLSD EVLLESCVRL IISTSDLAHE KHVKVDDSLV EMMAKYASKA KRFSNKLTEQ 60
61 QASEILQKAK IFNKALTEEV ATEAENYRKE KELSRLGKVI DLTDSVPASP SLSPSLSSTI 120
121 ASSSAESRAD YLQRKALSSS ITGRPRVAQP KITSFGTFQS SANAKLHRTK PVKPLSKMEL 180
181 ARMQLLNNRV VHPPSAPAFH TKSRGLSNKN DDSSSEESDN DIESARELFA IAKAKGKGIQ 240
241 TVDINGKVVK RQTAAELAKQ ELEHMRKRLN VDMNPLYEII LQWDYTRN
|
| Detection Method: | |
| Confidence: | 1.16 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1129-1859] |
1 11 21 31 41 51
| | | | | |
1 SEYPDDEPIG NYSDVKDFFN SPADYQKVMK PLLLLESWQG LCSSRDREDY KPFSIIVGNR 60
61 TAVSDFYDVY ASVAKQVIQD CGISESDLIV MAYLPDFRPD KRLSSDDFKK AQHTCLAKVR 120
121 TLKNTKGGNV DVTLRIHRNH SFSKFLTLRS EIYCVKVMQM TTIEREYSTL EGLEYYDLVG 180
181 QILQAKPSPP VNVDAAEIET VKKSYKLNTS QAEAIVNSVS KEGFSLIQGP PGTGKTKTIL 240
241 GIIGYFLSTK NASSSNVIKV PLEKNSSNTE QLLKKQKILI CAPSNAAVDE ICLRLKSGVY 300
301 DKQGHQFKPQ LVRVGRSDVV NVAIKDLTLE ELVDKRIGER NYEIRTDPEL ERKFNNAVTK 360
361 RRELRGKLDS ESGNPESPMS TEDISKLQLK IRELSKIINE LGRDRDEMRE KNSVNYRNRD 420
421 LDRRNAQAHI LAVSDIICST LSGSAHDVLA TMGIKFDTVI IDEACQCTEL SSIIPLRYGG 480
481 KRCIMVGDPN QLPPTVLSGA ASNFKYNQSL FVRMEKNSSP YLLDVQYRMH PSISKFPSSE 540
541 FYQGRLKDGP GMDILNKRPW HQLEPLAPYK FFDIISGRQE QNAKTMSYTN MEEIRVAIEL 600
601 VDYLFRKFDN KIDFTGKIGI ISPYREQMQK MRKEFARYFG GMINKSIDFN TIDGFQGQEK 660
661 EIILISCVRA DDTKSSVGFL KDFRRMNVAL TRAKTSIWVL GHQRSLAKSK LWRDLIEDAK 720
721 DRSCLAYACS G
|
| Detection Method: | |
| Confidence: | 138.0 |
| Match: | 2gjkA |
| Description: | No description for 2gjkA was found. |
|
Region A: Residues: [1860-1966] |
1 11 21 31 41 51
| | | | | |
1 FLDPRNNRAQ SILRKFNVPV PSEQEDDYKL PMEYITQGPD EVKSNKDTKK RRVVDEGEEA 60
61 DKAVKKKKKE KKKEKKKSKA DDKKKNNKKA ESPSTSSGTK KKSSIFG
|
| Detection Method: | |
| Confidence: | 106.0 |
| Match: | 1pjrA |
| Description: | STRUCTURE OF DNA HELICASE |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1967-2231] |
1 11 21 31 41 51
| | | | | |
1 GMSVPSAVVP KTFPDVDSNK KAAAVVGKKK NNKHVCFSDD VSFIPRNDEP EIKVTRSLSS 60
61 VLKEKQLGLK ETRTISPPEI SNNEDDDDED DYTPSISDSS LMKSEANGRN NRVASHNQNF 120
121 SASIYDDPQV SQAKQTQVPA AITKHRSSNS VLSGGSSRIL TASDYGEPNQ NGQNGANRTL 180
181 SQHVGNANQY STAPVGTGEL HETLPAHPQD SYPAEAEDPY DLNPHPQPQS SAFKGPGSGP 240
241 TGTRNSSRRN ASSSPFIPKK RKPRS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
