YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15219364

General Information:
Name(s) found: gi|15219364 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|15219364|ref|NP_173124.1| tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1939 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKVSPSGE LLNRWRRIEE DEEENDDSDP SAVRRLNQRK EQWFTDAFTL LISLPKDTHI  60
   61 WCGHGDIMGP LIETFYNYFK DDRVDSPLKV LWKRISEEMR LCAQCICQHH QTQEMYEKEY 120
  121 ECSSVGPLLV VLRKLDEERV TRHLQEINLK IEKGTYDPDH HHAEVVSVMY EVLMFPFFFD 180
  181 DMSLCTEFEK FIESIDNIHE LAFAENQEFP VSNPVRAPPA IAQEIHWNSG DGGTAFRVSG 240
  241 TETKDISRPL IYMAWDDITV PVSSNFSLLA RRIGHKIALL IVLRGYKMNP PCPPFECAHM 300
  301 WGPSLVSSYK DSSLHISLRQ PAIDLVQAIL VSDATALLAS LLRNNTGKFM GYEIQYDDDD 360
  361 MESEKNDEMT VDIETWLSSS AVEIKGTLGW KVATGSDDGG PGKESKNSVT VSKMCLTLIR 420
  421 TLKRLTTCYL VQIGDECRKQ WTWVPEMGET FILSLSDPDD NVRQFGKSML EHVSNTRGPF 480
  481 ELCPSKLSDP APFFLFIVQV AEGRGGGHYR RSEEFRRGMT CVRLLEILPV VLGKLRVSRE 540
  541 ESCDTRGTLK DASDLKWLPD LIDWGRSQLK VVVAYWKRAL VALLDILQGS NSDACSSAVQ 600
  601 AIRHVLSSGD TIDNALTLLN SDDVDIEQLA EQISRLVPKA NEYQILKPVD VVGKLQDNMM 660
  661 DLTVDETEKE SLKNLPSLHK SHQPDINKTL LPIKNISQIS SLKKSTSSID ASKLSALVLS 720
  721 ERDVTVSSSN IVRDLPTTNA EPSKAAGMSR EAEKRQNVED PVSSGIRPNL KKATDELGPR 780
  781 GTSKEAQKSA ISNAKGMDLR KVVNETEVDP LDLALKSLKR QSLPLAKSGP IVPKRQVIQL 840
  841 CAPVNKKSDR WQRQEAGFKR FRPPKLEDWF RKILQMDYYA IVGLASTKKD ESQNVGKFRE 900
  901 VPVRFGSPEQ YIQIFQPLVL EEFKAQLQSS FQEISSLEEI YYGVISVLSI ERVDDFHFVR 960
  961 FMQDENDGSN SKSFSENDLV LFTKEHPENS NVGVNMMGKV EGREWDDKKR TSILNVRLYL1020
 1021 QNASSRLNQA RRNLLERSQW HASRILNITS QIREFQALSC IKDIPVLPLI LSPMNDSNYD1080
 1081 SEVKRSDLRS LPHSLQQILK SSFNESQLQA ISVAIGSSNL MKAFDISLIQ GPPGTGKTRT1140
 1141 IVAIISGLLA SASHKTSDRG NSEPGHSSST SRQGMNPSVA VARAWQDAAL AKQLNDNSET1200
 1201 NRKIAEKNGR GRVLICAQSN AAVDELVSRI SSLGIYGRDG KMFKPYLVRV GNAKTVHSNS1260
 1261 MPFFLDTLVD QRLAEERMRI NESKSNKGAD SSALLRSNLE KVVDQITHFE AKRANINQES1320
 1321 LDAKDKPENE HHNKDDDGKL MSDAELGIRL RRLYEQKRKI YKDLSAVQAQ ERKANYEMRT1380
 1381 LKQKLRKSIL KEAQIVVTTL SGCGGDLYSV CAESLAAHKF GSPSEDNLFD AVVIDEAAQA1440
 1441 LEPATLIPLQ LLKSRGTKCI MVGDPKQLPA TVLSNVASKF LYECSMFERL QRAGYPILML1500
 1501 TQQYRMHPEI CRFPSMHFYD NKLLNGVDMS SKSAPFHENH HLGPYVFYDI VDGQEHRSGD1560
 1561 SSSVCNEQEA EAAVQLLRFF KKRYPSEFVA GRIGIITPYK RQLAVLRSRF TGAFGAQVTA1620
 1621 DMEMNTVDGF QGKEVDILVL STVRATHSAP DGVNQSRIGF VADVRRMNVA LTRAKLSLWV1680
 1681 LGNTRTLQRD HNWGALVKDA KEREVIIPVK RPYNYMFGEN VMEQNHSENL PKNFPKPDKQ1740
 1741 HSRRKEQRAE TSSDRKLRKT DGDVVPISSK GSESKHTRRN AKEEASSQRE KLVASCEKVT1800
 1801 SEETLRRSHE KKEKMKGREK SSNPEITDAN SSKNENSNEW KKSKKASSKL DSSKRANPTD1860
 1861 KIGQQDRQIN KGNASNQGGV EDMISKRKQQ REAVAAILNS SLIPSHKPKP PKRPLSPGST1920
 1921 AGSHTRPPKA IKESTKNNS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..213] deduced N/A No confident structure predictions are available.
    2 View Details [214..358] deduced N/A No confident structure predictions are available.
    3 View Details [359..568] PSI-BLAST 4.522879 Heavy meromyosin subfragment
    4 View Details [569..1072] PSI-BLAST 10.522879 Botulinum neurotoxin
    5 View Details [1073..1730] PSI-BLAST 69.69897 No description for 2gjkA was found.
    6 View Details [1731..1939] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle