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View Structure Prediction Details

Protein: MAG2
Organism: Saccharomyces cerevisiae
Length: 670 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAG2.

Description E-value Query
Range
Subject
Range
MAG2_YEAST - RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAG2 PE=1 SV=1
MAG2 - Cytoplasmic protein of unknown function; induced in response to mycotoxin patulin; ubiquitinated pro...
0.0 [1..670] [1..670]
SPBP8B7.23 - ubiquitin-protein ligase E3
YORN_SCHPO - Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...
1.0E-97 [1..536] [1..564]
CG12099-PB, CG12... - This gene is referred to in FlyBase by the symbol Dmel\CG12099 (CG12099, FBgn0035232). It is a prote...
1.0E-68 [3..512] [12..519]
gi|123994259, gi... - gi|60654675|gb|AAX31902.1| ring finger protein 10 [synthetic construct], gi|60654673|gb|AAX31901.1| ...
RNF10 - ring finger protein 10
2.0E-57 [3..376] [35..382]
gi|7710090, gi|5... - gi|7710090|ref|NP_057907.1| ring finger protein 10 [Mus musculus], gi|5931598|dbj|BAA84700.1| RIE2 [...
6.0E-54 [3..369] [35..380]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEPDMQKKA SGGSGGSEMD TLNATSNSSK QGVSNNKRNP VSKKKPGNKV SDGRDNAHNY  60
   61 HGEGRRKSSK QQRSRTPYKE TSTRINDQDI DLSIQEEILG GNFKLRGRKT QVSINHLLNF 120
  121 QLPEVEREKS RSSSSKKSNR RRDEHVHL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGDTFVNVNY RLLVDDRFDY PEQNCNPNVP VDQEKILRVI VPKGQNCSIC LSEEPVAPRM  60
   61 VTCGHIFCLS CLLNFFSIEE TVKNKETGYS KKKKYKECPL CGSIIGPKRV KPVLYEDDFD 120
  121 VTRLNQKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1jm7B_
Description: bard1 RING domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.768717508465717 bayes_pls_golite062009
protein binding 0.38968855779244 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [277-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPGATVHLQL MCKPHGSLLP LPVALHLDPL KCGNFPPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.09691
Match: 1fre__
Description: Nuclear factor XNF7
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [315-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLGSIKHYAH IMKCGVSYSL ELYQKDIVAI QEQYEIDKAI YNDSGKFVKQ SIENINDQIS  60
   61 TLLAATTDLS PLSNDINNGL DNFHFDDDLL TKYDDSSAYF FYQTLVASST KYFLSPLDVK 120
  121 ILLTIFHYYS KFPESIETTV ENIHYDTVVT EQLIRRYKYI GHLPIGTEIA LLDLDWRKI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [494-670]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLPKEIYEQ FAHELKQRRR KFTMKKQKED KEKKLYEKRL EQEHAEFYRK ENGNSLKFED  60
   61 SVQMATHYES IVSSSIPLNS LGISMLGPPT NSCSTPQKQA PSHTKRTIWG TSIAVTEDEK 120
  121 ASKENKEFQD MLLQRIRQED SSDVTDSTDS PPTSNGKRGR KKKGKVMLFS SNHQALG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle