| Protein: | SGD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 899 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..899] | [1..899] |
|
|
0.0 | [9..810] | [98..858] |
|
|
0.0 | [201..809] | [44..630] |
|
|
0.0 | [2..805] | [18..790] |
|
|
0.0 | [240..808] | [17..555] |
|
|
0.0 | [136..805] | [1..626] |
|
Region A: Residues: [1-309] |
1 11 21 31 41 51
| | | | | |
1 MQKTDGIRIP GVILDELKTL DYSQDERFSI SEGKKRRRGN GKHLSRKEKR KMERADKKRK 60
61 IISTREINSS RLKSAPTSEK RSANAGVKNV GKQANGKNPI SSDESESNEN WDSDEVLTDE 120
121 VAEESGEQAM SAEETMKKLE SLKRKAKGIQ GAENSGEIKG NSYEKKHIRN RDTNENFVSY 180
181 PLAPSDRSAF ERDEMDMQYY AKKLGLKGER KAIHAKDEFD AIGGLLEGLE YFENYGKSDE 240
241 EYGDFATETN SMRKDDEASE KAFSSDDDLS ASDFEDSDGL SESDNDSVAD SDDNYRREKE 300
301 NPYVAPTQS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [310-442] |
1 11 21 31 41 51
| | | | | |
1 VESYVPPSLR KKLDDSENNS TLSEISKKVN SSLNKLSDSN ITIIITDLNR LYDSLPRQYV 60
61 TESLTKGILN IISQNQKLLD GFIMNYAALA YTLSKLRGIE VGAFFIQKTV EAFLHHYEEE 120
121 MENILKDQQS KIS
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1hu3A_ |
| Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.51289989021257 | bayes_pls_golite062009 |
| protein binding | 1.48452343997858 | bayes_pls_golite062009 |
| nucleic acid binding | 0.394131489393838 | bayes_pls_golite062009 |
|
Region A: Residues: [443-595] |
1 11 21 31 41 51
| | | | | |
1 SKICINIATL LSYCYNFGFV SCRLIYDIIR IFVADPNEFT TELLLRIISI SGQLIRGDDP 60
61 SALRDIRSEL LKNAKNLKEQ SPRLRFLMDT MSDLKNNRLK PSILATDHHP LKKNLQSILN 120
121 SSSSWEPLQV SLEDIKNIDS KGKWWLVGAS WRG
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1hu3A_ |
| Description: | Eukaryotic initiation factor eIF4G |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [596-837] |
1 11 21 31 41 51
| | | | | |
1 NMENAFEVSI NNENDASKSK KSKISIEDDL LDDIPDWNII ARQQRMNTDI RRAIFISIMS 60
61 AQDYLDAFSK LEKLSLKNKQ VLEIPRIVLH CLLADSGSNG YNHYYALVAN KICERYSHLS 120
121 KSFQFLFWDV IKKFEDKEFD SESDTDEEDD LDDKEKLLRI SNQGRFFGSL LANDILKLDV 180
181 FKHVPFMGGL NTEGMLFMEI LLFQLFLTVA KKSEKKLKMD ESGNKRIIYS DDYLRDVLTK 240
241 NV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.40695139302924 | bayes_pls_golite062009 |
| protein binding | 1.35895139229414 | bayes_pls_golite062009 |
| nucleic acid binding | 0.342838152542467 | bayes_pls_golite062009 |
|
Region A: Residues: [838-899] |
1 11 21 31 41 51
| | | | | |
1 KSENMLFILK GLKWFINKKF RYHNFLAGKK GDKAFDRDER RLAWASKAAK SIIDKELENI 60
61 DS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
