| Protein: | SGD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 899 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..899] | [1..899] |
|
|
0.0 | [9..810] | [98..858] |
|
|
0.0 | [201..809] | [44..630] |
|
|
0.0 | [2..805] | [18..790] |
|
|
0.0 | [240..808] | [17..555] |
|
|
0.0 | [136..805] | [1..626] |
|
Region A: Residues: [1-309] |
1 11 21 31 41 51
| | | | | |
1 MQKTDGIRIP GVILDELKTL DYSQDERFSI SEGKKRRRGN GKHLSRKEKR KMERADKKRK 60
61 IISTREINSS RLKSAPTSEK RSANAGVKNV GKQANGKNPI SSDESESNEN WDSDEVLTDE 120
121 VAEESGEQAM SAEETMKKLE SLKRKAKGIQ GAENSGEIKG NSYEKKHIRN RDTNENFVSY 180
181 PLAPSDRSAF ERDEMDMQYY AKKLGLKGER KAIHAKDEFD AIGGLLEGLE YFENYGKSDE 240
241 EYGDFATETN SMRKDDEASE KAFSSDDDLS ASDFEDSDGL SESDNDSVAD SDDNYRREKE 300
301 NPYVAPTQS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [310-442] |
1 11 21 31 41 51
| | | | | |
1 VESYVPPSLR KKLDDSENNS TLSEISKKVN SSLNKLSDSN ITIIITDLNR LYDSLPRQYV 60
61 TESLTKGILN IISQNQKLLD GFIMNYAALA YTLSKLRGIE VGAFFIQKTV EAFLHHYEEE 120
121 MENILKDQQS KIS
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1hu3A_ |
| Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.51289989021257 | bayes_pls_golite062009 |
| protein binding | 1.48452343997858 | bayes_pls_golite062009 |
| nucleic acid binding | 0.394131489393838 | bayes_pls_golite062009 |
|
Region A: Residues: [443-595] |
1 11 21 31 41 51
| | | | | |
1 SKICINIATL LSYCYNFGFV SCRLIYDIIR IFVADPNEFT TELLLRIISI SGQLIRGDDP 60
61 SALRDIRSEL LKNAKNLKEQ SPRLRFLMDT MSDLKNNRLK PSILATDHHP LKKNLQSILN 120
121 SSSSWEPLQV SLEDIKNIDS KGKWWLVGAS WRG
|
| Detection Method: | |
| Confidence: | 43.0 |
| Match: | 1hu3A_ |
| Description: | Eukaryotic initiation factor eIF4G |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [596-837] |
1 11 21 31 41 51
| | | | | |
1 NMENAFEVSI NNENDASKSK KSKISIEDDL LDDIPDWNII ARQQRMNTDI RRAIFISIMS 60
61 AQDYLDAFSK LEKLSLKNKQ VLEIPRIVLH CLLADSGSNG YNHYYALVAN KICERYSHLS 120
121 KSFQFLFWDV IKKFEDKEFD SESDTDEEDD LDDKEKLLRI SNQGRFFGSL LANDILKLDV 180
181 FKHVPFMGGL NTEGMLFMEI LLFQLFLTVA KKSEKKLKMD ESGNKRIIYS DDYLRDVLTK 240
241 NV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.40695139302924 | bayes_pls_golite062009 |
| protein binding | 1.35895139229414 | bayes_pls_golite062009 |
| nucleic acid binding | 0.342838152542467 | bayes_pls_golite062009 |
|
Region A: Residues: [838-899] |
1 11 21 31 41 51
| | | | | |
1 KSENMLFILK GLKWFINKKF RYHNFLAGKK GDKAFDRDER RLAWASKAAK SIIDKELENI 60
61 DS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.658 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.591 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.719 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.575 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.526 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.522 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.510 | a.4.1 | Homeodomain-like |
| View | Download | 0.504 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.450 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.442 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.442 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.437 | a.64.1 | Saposin |
| View | Download | 0.433 | a.4.1 | Homeodomain-like |
| View | Download | 0.422 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.409 | a.7.7 | BAG domain |
| View | Download | 0.408 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.403 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.393 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.392 | a.60.8 | HRDC-like |
| View | Download | 0.388 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.388 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.368 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.366 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.365 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.360 | a.4.1 | Homeodomain-like |
| View | Download | 0.358 | c.47.1 | Thioredoxin-like |
| View | Download | 0.358 | a.46.1 | Methionine synthase domain |
| View | Download | 0.357 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.356 | a.39.1 | EF-hand |
| View | Download | 0.348 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.341 | a.4.1 | Homeodomain-like |
| View | Download | 0.339 | a.4.1 | Homeodomain-like |
| View | Download | 0.339 | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.338 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.335 | a.130.1 | Chorismate mutase II |
| View | Download | 0.334 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.333 | a.4.1 | Homeodomain-like |
| View | Download | 0.330 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.326 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.325 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.322 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.319 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.318 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.318 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.314 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.312 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.308 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.306 | a.4.1 | Homeodomain-like |
| View | Download | 0.296 | a.4.1 | Homeodomain-like |
| View | Download | 0.292 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.285 | a.101.1 | Uteroglobin-like |
| View | Download | 0.284 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.282 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.280 | a.21.1 | HMG-box |
| View | Download | 0.271 | a.64.1 | Saposin |
| View | Download | 0.270 | a.4.1 | Homeodomain-like |
| View | Download | 0.270 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.267 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.263 | a.64.1 | Saposin |
| View | Download | 0.261 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.261 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.260 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.257 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.252 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.251 | a.64.1 | Saposin |
| View | Download | 0.250 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.243 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.240 | a.64.1 | Saposin |
| View | Download | 0.238 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.237 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.234 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.231 | a.101.1 | Uteroglobin-like |
| View | Download | 0.230 | d.58.49 | YajQ-like |
| View | Download | 0.230 | a.64.1 | Saposin |
| View | Download | 0.227 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.226 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.225 | a.64.1 | Saposin |
| View | Download | 0.222 | a.39.1 | EF-hand |
| View | Download | 0.222 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.219 | a.64.1 | Saposin |
| View | Download | 0.217 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.215 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.214 | a.101.1 | Uteroglobin-like |
| View | Download | 0.213 | a.46.1 | Methionine synthase domain |
| View | Download | 0.210 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.209 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.205 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.205 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.202 | a.4.5 | "Winged helix" DNA-binding domain |
