| Protein: | GCD7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 381 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCD7.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..381] | [1..381] |
|
|
1.0E-97 | [13..376] | [6..351] |
|
|
8.0E-96 | [13..376] | [6..351] |
|
|
2.0E-95 | [11..376] | [2..351] |
|
|
1.0E-93 | [13..376] | [6..351] |
|
|
1.0E-91 | [11..376] | [2..355] |
|
|
2.0E-90 | [14..376] | [6..355] |
|
|
4.0E-90 | [15..376] | [1..407] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MSSQAFTSVH PNAATSDVNV TIDTFVAKLK RRQVQGSYAI ALETLQLLMR FISAARWNHV 60
61 NDLIEQIRDL GNSLEKAHPT AFSCGNVIRR ILAVLRDEVE EDTMSTTVTS TSVAEPLISS 120
121 MFNLLQKPEQ PHQNRKN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.940 | 0.010 | mitochondrion | a.118.8 | TPR-like |
| Term | Confidence | Notes |
| translation initiation factor activity | 10.1099993541596 | bayes_pls_golite062009 |
| translation regulator activity | 5.74669335554405 | bayes_pls_golite062009 |
| nucleic acid binding | 2.17718456512191 | bayes_pls_golite062009 |
| transcription regulator activity | 1.9283980201455 | bayes_pls_golite062009 |
| DNA binding | 1.55389679363348 | bayes_pls_golite062009 |
| binding | 1.53908996868286 | bayes_pls_golite062009 |
| catalytic activity | 1.31732715713197 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.09424756417577 | bayes_pls_golite062009 |
| transcription factor activity | 0.995059566132783 | bayes_pls_golite062009 |
| CoA-transferase activity | 0.0320953696548698 | bayes_pls_golite062009 |
| protein binding | 0.0293610121675921 | bayes_pls_golite062009 |
|
Region A: Residues: [138-311] |
1 11 21 31 41 51
| | | | | |
1 SSGSSSMKTK TDYRQVAIQG IKDLIDEIKN IDEGIQQIAI DLIHDHEILL TPTPDSKTVL 60
61 KFLITARERS NRTFTVLVTE GFPNNTKNAH EFAKKLAQHN IETLVVPDSA VFALMSRVGK 120
121 VIIGTKAVFV NGGTISSNSG VSSVCECARE FRTPVFAVAG LYKLSPLYPF DVEK
|
|
Region B: Residues: [376-381] |
1 11 21 31 41 51
| | | | | |
1 LDKNKA
|
| Detection Method: | |
| Confidence: | 10.68 |
| Match: | 1m0sA |
| Description: | D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [312-375] |
1 11 21 31 41 51
| | | | | |
1 FVEFGGSQRI LPRMDPRKRL DTVNQITDYV PPENIDIYIT NVGGFNPSFI YRIAWDNYKQ 60
61 IDVH
|
| Detection Method: | |
| Confidence: | 10.68 |
| Match: | 1m0sA |
| Description: | D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain |
| Matching Structure (courtesy of the PDB): |
|
