| Protein: | PDR8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 701 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDR8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..701] | [1..701] |
|
|
2.0E-75 | [8..499] | [1..519] |
|
|
2.0E-73 | [29..563] | [5..545] |
|
|
2.0E-72 | [8..499] | [1..516] |
|
|
5.0E-70 | [8..499] | [1..521] |
|
|
8.0E-66 | [8..497] | [1..537] |
|
Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MDGSHFPMKS TTGEPVSSGK KGKRRKVIKS CAFCRKRKLK CSQARPMCQQ CVIRKLPQCV 60
61 YTEEFNYPLS NTELFEQVPN VALVQKIENL QTLLKENDNN N
|
| Detection Method: |  |
| Confidence: | 68.67837 |
| Match: | 1hwtD_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [102-169] |
1 11 21 31 41 51
| | | | | |
1 AKPVYCRSSE NPLRSLRTSV LGDNGSRYVF GPTSWKTLSL FEQNKFQTEF QNLWKVLKPL 60
61 PECTKSQL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [170-446] |
1 11 21 31 41 51
| | | | | |
1 NENDVVADLP SFPQMESCIK SFFAGPLFGI LHIFNQDDIL SLLDRLFIRD TTDKNLVILL 60
61 DLQGNAKDKY NLGIVLQILC LGYYNQDIPS SVSHFLHTLS AASLSSSSSN FVEKLQFFLL 120
121 SYISVMINCT DGVWDATQGV DLINELCQGC ISLGLNDIDK WYLNESEETK QNLRCIWFWA 180
181 LFLDVSTSYD IGNPPSISDD LLDLSIFTAQ NFQSPSIDFR RVKLMHDFLD VSRFTTREIH 240
241 KREMNEKLTT FSLRLIEFIQ SNFSPIEHYT NSVYYSD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [447-507] |
1 11 21 31 41 51
| | | | | |
1 IDPFDILILS RSLSIVASIY NIEMIIAQQS RIIDKNRMVQ FLLISISVCV NTMVFHFKEP 60
61 I
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.936 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
|
Region A: Residues: [508-701] |
1 11 21 31 41 51
| | | | | |
1 NDQENVLTEG LKLSIILINP LLIRIVSQVY SLAFNRLIFR EKAFLFLIDL DTGKKIQFIK 60
61 YEEENFDELL TGFDVRTDKF LSFSGTIIRF YEIIDSIFAV NERNKRLLKA VSNFYQLTST 120
121 LAFERVSRVL FDKASQARIE TEKIWLKKGI NMEHFSDLMI EDFINDVWKT FKEISKDLWS 180
181 IDKKKFYKQY HFDL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
