YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MSC3
Organism: Saccharomyces cerevisiae
Length: 728 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSC3.

Description E-value Query
Range
Subject
Range
MSC3 - Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cell pe...
MSC3_YEAST - Meiotic sister-chromatid recombination protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...
0.0 [1..728] [1..728]
gi|2213830 - gi|2213830|gb|AAB61579.1| nucleus and microtubule-associated protein [Cricetulus longicaudatus]
0.005 [508..700] [263..440]

Back

Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFGFTKRDR RVPDLSRYDY YYQNHEDYNK SPQLSAAAAS AASAASPDRT NYSRSHSLVS  60
   61 HAPSIPRQRS SVKSPGRRLS TSSAAPPTSR AAAKQYSQKT YSLRSQRSGE YHLHPPGYTT 120
  121 NGSRMNSMTS GANVRRNYGK NKSTAGNNND SRANSITVKT TQVTDP

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 11.14
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [167-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGRTQSITKK TIRKINGYEY VETTTTTKNL VPLGDSQRHF DEFSENYMLQ DDDILEEQAS  60
   61 DNIHDIIEEN ETDNEKPYSP VSESHLQDDS ELNVEKPDFP LGSYFHHKYS TDVMPLEEES 120
  121 SLSNFSDALD YIPPTHQTSS KYIHNKRKQA STTRRKKRPP AVKNAEAEAK KPLTEAEMYL 180
  181 KALEVAKRNV YHTDAASDNA SAPLGSNKSR KSRMGQKMTL RSSSDSPTAT ANLVKSNVEV 240
  241 QPKRFTSSFF SRNTKSAPHE VHNHSVSTHF KSNKAVDPVP EPKSANTGLT DKEMYDQALK 300
  301 IAQARYYNSH GIQPEAVDNS TTAAKPRQVG VSHLGSTGSI PPNEQHYLGD SEIPVQSEV

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 10.93
Match: 1jv2B
Description: Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [526-665]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEYEPIPLQK TKTTGSSKNK FKTMFDKVLQ FSQENYGYQH KKEQGEQTPV TRNAEESFPA  60
   61 ASISEGVTTA KPSSNEGVMT NPVVTDSPSP LQQQIDSTTA SSNGQSQGNV PTSAVASTTR 120
  121 TRSPELQDNL KSSSSLLQDQ 

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 10.93
Match: 1jv2B
Description: Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [666-728]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPQRQEDATD PTTSSTNELS AAEPTMVTST HATKTIQAQT QDPPTKHKKS SFFTKLFKKK  60
   61 SSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.396 0.898 reciprocal meiotic recombination d.50.1 dsRNA-binding domain-like

Predicted Domain #5
Region A:
Residues: [689-728]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTMVTSTHAT KTIQAQTQDP PTKHKKSSFF TKLFKKKSSR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle