| Protein: | MSC3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 728 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSC3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..728] | [1..728] |
|
|
0.005 | [508..700] | [263..440] |
|
Region A: Residues: [1-166] |
1 11 21 31 41 51
| | | | | |
1 MVFGFTKRDR RVPDLSRYDY YYQNHEDYNK SPQLSAAAAS AASAASPDRT NYSRSHSLVS 60
61 HAPSIPRQRS SVKSPGRRLS TSSAAPPTSR AAAKQYSQKT YSLRSQRSGE YHLHPPGYTT 120
121 NGSRMNSMTS GANVRRNYGK NKSTAGNNND SRANSITVKT TQVTDP
|
| Detection Method: |  |
| Confidence: | 11.14 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [167-525] |
1 11 21 31 41 51
| | | | | |
1 SGRTQSITKK TIRKINGYEY VETTTTTKNL VPLGDSQRHF DEFSENYMLQ DDDILEEQAS 60
61 DNIHDIIEEN ETDNEKPYSP VSESHLQDDS ELNVEKPDFP LGSYFHHKYS TDVMPLEEES 120
121 SLSNFSDALD YIPPTHQTSS KYIHNKRKQA STTRRKKRPP AVKNAEAEAK KPLTEAEMYL 180
181 KALEVAKRNV YHTDAASDNA SAPLGSNKSR KSRMGQKMTL RSSSDSPTAT ANLVKSNVEV 240
241 QPKRFTSSFF SRNTKSAPHE VHNHSVSTHF KSNKAVDPVP EPKSANTGLT DKEMYDQALK 300
301 IAQARYYNSH GIQPEAVDNS TTAAKPRQVG VSHLGSTGSI PPNEQHYLGD SEIPVQSEV
|
| Detection Method: | |
| Confidence: | 10.93 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [526-665] |
1 11 21 31 41 51
| | | | | |
1 HEYEPIPLQK TKTTGSSKNK FKTMFDKVLQ FSQENYGYQH KKEQGEQTPV TRNAEESFPA 60
61 ASISEGVTTA KPSSNEGVMT NPVVTDSPSP LQQQIDSTTA SSNGQSQGNV PTSAVASTTR 120
121 TRSPELQDNL KSSSSLLQDQ
|
| Detection Method: | |
| Confidence: | 10.93 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [666-728] |
1 11 21 31 41 51
| | | | | |
1 TPQRQEDATD PTTSSTNELS AAEPTMVTST HATKTIQAQT QDPPTKHKKS SFFTKLFKKK 60
61 SSR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [689-728] |
1 11 21 31 41 51
| | | | | |
1 PTMVTSTHAT KTIQAQTQDP PTKHKKSSFF TKLFKKKSSR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
