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View Structure Prediction Details

Protein: RPS31
Organism: Saccharomyces cerevisiae
Length: 152 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS31.

Description E-value Query
gi|600539 - gi|600539|gb|AAA57047.1| ubiquitin [synthetic construct]
1.0E-68 [1..151] [1..151]
RS27A_CAVPO - Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=1 SV=2
gi|148222699, gi... - gi|49257574|gb|AAH74147.1| MGC81889 protein [Xenopus laevis], gi|148222699|ref|NP_001086065.1| MGC81...
gi|189055074, gi... - gi|70656|pir||UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human, gi|4506713|r...
RS27A_BOVIN - Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1 SV=2
gi|55595793 - gi|55595793|ref|XP_515482.1| PREDICTED: hypothetical protein XP_515482 [Pan troglodytes]
gi|149727572 - gi|149727572|ref|XP_001496841.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a [Equus c...
gi|126303852 - gi|126303852|ref|XP_001375230.1| PREDICTED: similar to ubiquitin [Monodelphis domestica]
gi|149640802, gi... - gi|149640802|ref|XP_001509244.1| PREDICTED: similar to ubiquitin isoform 1 [Ornithorhynchus anatinus...
tr|M3WWF6|M3WWF6... - Ribosomal protein S27a OS=Felis catus GN=RPS27A PE=4 SV=1
ENSOCUP000000031... - pep:known scaffold:oryCun2:AAGW02082242:9564:11919:1 gene:ENSOCUG00000003613 transcript:ENSOCUT00000...
CCDS33202.1_1 - null
gi|67970806 - gi|67970806|dbj|BAE01745.1| unnamed protein product [Macaca fascicularis]
gi|109103033 - gi|109103033|ref|XP_001112274.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a precurso...
gi|62859181, gi|... - gi|89268219|emb|CAJ83451.1| ribosomal protein S27a [Xenopus tropicalis], gi|62859181|ref|NP_00101617...
ENSCJAT000000195... - null, null
2.0E-68 [1..151] [1..151]
gi|300676798|gb|... - ribosomal protein S27a [Zonotrichia albicollis], ribosomal protein S27a [Zonotrichia albicollis]
RS27A_CHICK - Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=2 SV=3
gi|224047492 - gi|224047492|ref|XP_002199635.1| PREDICTED: similar to ribosomal protein S27a [Taeniopygia guttata]
2.0E-68 [1..151] [1..151]
RS27A_MOUSE - Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=1 SV=2
RS27A_RAT - Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=2
4.0E-68 [1..151] [1..151]
gi|41055516, gi|... - gi|41055516|ref|NP_956796.1| ribosomal protein S27a [Danio rerio], gi|33585739|gb|AAH55524.1| Zgc:66...
gi|221219368 - gi|221219368|gb|ACM08345.1| Ubiquitin [Salmo salar]
gi|167860808 - gi|167860808|gb|ACA05172.1| ribosomal protein S27a [Oncorhynchus masou formosanus]
RS27A_ICTPU - Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=2 SV=2
gi|124300843 - gi|124300843|dbj|BAF45917.1| ribosomal protein S27a [Solea senegalensis]
gi|229366594 - gi|229366594|gb|ACQ58277.1| Ubiquitin [Anoplopoma fimbria]
gi|225707998 - gi|225707998|gb|ACO09845.1| Ubiquitin [Osmerus mordax]
8.0E-68 [1..151] [1..151]
gi|194130389, gi... - gi|195339809|ref|XP_002036509.1| GM18339 [Drosophila sechellia], gi|194130389|gb|EDW52432.1| GM18339...
gi|195387453, gi... - gi|195387453|ref|XP_002052410.1| GJ21841 [Drosophila virilis], gi|194148867|gb|EDW64565.1| GJ21841 [...
gi|195050553, gi... - gi|195050553|ref|XP_001992918.1| GH13542 [Drosophila grimshawi], gi|193899977|gb|EDV98843.1| GH13542...
gi|195146884, gi... - gi|195146884|ref|XP_002014414.1| GL18966 [Drosophila persimilis], gi|194106367|gb|EDW28410.1| GL1896...
gi|190616816, gi... - gi|194761816|ref|XP_001963119.1| GF15783 [Drosophila ananassae], gi|190616816|gb|EDV32340.1| GF15783...
gi|190661346, gi... - gi|194859914|ref|XP_001969479.1| GG10127 [Drosophila erecta], gi|190661346|gb|EDV58538.1| GG10127 [D...
RpS27A-PA - The gene Ribosomal protein S27A is referred to in FlyBase by the symbol Dmel\RpS27A (CG5271, FBgn000...
gi|198476974, gi... - gi|198476974|ref|XP_002136823.1| GA24218 [Drosophila pseudoobscura pseudoobscura], gi|198145148|gb|E...
gi|38048335, gi|... - gi|38048335|gb|AAR10070.1| similar to Drosophila melanogaster RpS27A [Drosophila yakuba], gi|3804752...
gi|220950462, gi... - gi|220959398|gb|ACL92242.1| RpS27A-PA [synthetic construct], gi|220950462|gb|ACL87774.1| RpS27A-PA [...
gi|195457480, gi... - gi|195457480|ref|XP_002075583.1| GK18589 [Drosophila willistoni], gi|194171668|gb|EDW86569.1| GK1858...
gi|195578195, gi... - gi|195578195|ref|XP_002078951.1| GD23696 [Drosophila simulans], gi|194190960|gb|EDX04536.1| GD23696 ...
1.0E-64 [1..150] [1..150]
gi|18071662 - gi|18071662|gb|AAL55470.1| ubiquitin/ribosomal protein S27a fusion protein [Branchiostoma belcheri t...
2.0E-63 [1..151] [1..151]
gi|255568846, gi... - gi|255568846|ref|XP_002525394.1| ubiquitin, putative [Ricinus communis], gi|223535357|gb|EEF37032.1|...
gi|59800131 - gi|59800131|gb|AAX07419.1| ubiquitin/s27a 40S ribosomal protein [Nicotiana benthamiana]
gi|2894306, gi|2... - gi|2894306|emb|CAA11268.1| ubiquitin extension protein [Nicotiana tabacum], pir||T52335 ubiquitin ex...
1.0E-62 [1..151] [1..151]
RS27A_SPOFR - Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda PE=2 SV=2
1.0E-62 [1..150] [1..150]


Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 378.071898
Match: 1aarA_
Description: Ubiquitin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [90-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
   61 VNA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.124939
Match: PF01599
Description: Ribosomal protein S27a

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle