YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS31
Organism:	Saccharomyces cerevisiae
Length:	152 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS31.

Description	E-value	Query Range	Subject Range
gi\|600539 - gi\|600539\|gb\|AAA57047.1\| ubiquitin [synthetic construct]	1.0E-68	[1..151]	[1..151]
RS27A_CAVPO - Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=1 SV=2 gi\|148222699, gi... - gi\|49257574\|gb\|AAH74147.1\| MGC81889 protein [Xenopus laevis], gi\|148222699\|ref\|NP_001086065.1\| MGC81... gi\|189055074, gi... - gi\|70656\|pir\|\|UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human, gi\|4506713\|r... RS27A_BOVIN - Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1 SV=2 gi\|55595793 - gi\|55595793\|ref\|XP_515482.1\| PREDICTED: hypothetical protein XP_515482 [Pan troglodytes] gi\|149727572 - gi\|149727572\|ref\|XP_001496841.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a [Equus c... gi\|126303852 - gi\|126303852\|ref\|XP_001375230.1\| PREDICTED: similar to ubiquitin [Monodelphis domestica] gi\|149640802, gi... - gi\|149640802\|ref\|XP_001509244.1\| PREDICTED: similar to ubiquitin isoform 1 [Ornithorhynchus anatinus... tr\|M3WWF6\|M3WWF6... - Ribosomal protein S27a OS=Felis catus GN=RPS27A PE=4 SV=1 ENSOCUP000000031... - pep:known scaffold:oryCun2:AAGW02082242:9564:11919:1 gene:ENSOCUG00000003613 transcript:ENSOCUT00000... CCDS33202.1_1 - null gi\|67970806 - gi\|67970806\|dbj\|BAE01745.1\| unnamed protein product [Macaca fascicularis] gi\|109103033 - gi\|109103033\|ref\|XP_001112274.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precurso... gi\|62859181, gi\|... - gi\|89268219\|emb\|CAJ83451.1\| ribosomal protein S27a [Xenopus tropicalis], gi\|62859181\|ref\|NP_00101617... ENSCJAT000000195... - null, null	2.0E-68	[1..151]	[1..151]
gi\|300676798\|gb\|... - ribosomal protein S27a [Zonotrichia albicollis], ribosomal protein S27a [Zonotrichia albicollis] RS27A_CHICK - Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=2 SV=3 gi\|224047492 - gi\|224047492\|ref\|XP_002199635.1\| PREDICTED: similar to ribosomal protein S27a [Taeniopygia guttata]	2.0E-68	[1..151]	[1..151]
RS27A_MOUSE - Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=1 SV=2 RS27A_RAT - Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=2	4.0E-68	[1..151]	[1..151]
gi\|41055516, gi\|... - gi\|41055516\|ref\|NP_956796.1\| ribosomal protein S27a [Danio rerio], gi\|33585739\|gb\|AAH55524.1\| Zgc:66... gi\|221219368 - gi\|221219368\|gb\|ACM08345.1\| Ubiquitin [Salmo salar] gi\|167860808 - gi\|167860808\|gb\|ACA05172.1\| ribosomal protein S27a [Oncorhynchus masou formosanus] RS27A_ICTPU - Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=2 SV=2 gi\|124300843 - gi\|124300843\|dbj\|BAF45917.1\| ribosomal protein S27a [Solea senegalensis] gi\|229366594 - gi\|229366594\|gb\|ACQ58277.1\| Ubiquitin [Anoplopoma fimbria] gi\|225707998 - gi\|225707998\|gb\|ACO09845.1\| Ubiquitin [Osmerus mordax]	8.0E-68	[1..151]	[1..151]
gi\|194130389, gi... - gi\|195339809\|ref\|XP_002036509.1\| GM18339 [Drosophila sechellia], gi\|194130389\|gb\|EDW52432.1\| GM18339... gi\|195387453, gi... - gi\|195387453\|ref\|XP_002052410.1\| GJ21841 [Drosophila virilis], gi\|194148867\|gb\|EDW64565.1\| GJ21841 [... gi\|195050553, gi... - gi\|195050553\|ref\|XP_001992918.1\| GH13542 [Drosophila grimshawi], gi\|193899977\|gb\|EDV98843.1\| GH13542... gi\|195146884, gi... - gi\|195146884\|ref\|XP_002014414.1\| GL18966 [Drosophila persimilis], gi\|194106367\|gb\|EDW28410.1\| GL1896... gi\|190616816, gi... - gi\|194761816\|ref\|XP_001963119.1\| GF15783 [Drosophila ananassae], gi\|190616816\|gb\|EDV32340.1\| GF15783... gi\|190661346, gi... - gi\|194859914\|ref\|XP_001969479.1\| GG10127 [Drosophila erecta], gi\|190661346\|gb\|EDV58538.1\| GG10127 [D... RpS27A-PA - The gene Ribosomal protein S27A is referred to in FlyBase by the symbol Dmel\RpS27A (CG5271, FBgn000... gi\|198476974, gi... - gi\|198476974\|ref\|XP_002136823.1\| GA24218 [Drosophila pseudoobscura pseudoobscura], gi\|198145148\|gb\|E... gi\|38048335, gi\|... - gi\|38048335\|gb\|AAR10070.1\| similar to Drosophila melanogaster RpS27A [Drosophila yakuba], gi\|3804752... gi\|220950462, gi... - gi\|220959398\|gb\|ACL92242.1\| RpS27A-PA [synthetic construct], gi\|220950462\|gb\|ACL87774.1\| RpS27A-PA [... gi\|195457480, gi... - gi\|195457480\|ref\|XP_002075583.1\| GK18589 [Drosophila willistoni], gi\|194171668\|gb\|EDW86569.1\| GK1858... gi\|195578195, gi... - gi\|195578195\|ref\|XP_002078951.1\| GD23696 [Drosophila simulans], gi\|194190960\|gb\|EDX04536.1\| GD23696 ...	1.0E-64	[1..150]	[1..150]
gi\|18071662 - gi\|18071662\|gb\|AAL55470.1\| ubiquitin/ribosomal protein S27a fusion protein [Branchiostoma belcheri t...	2.0E-63	[1..151]	[1..151]
gi\|255568846, gi... - gi\|255568846\|ref\|XP_002525394.1\| ubiquitin, putative [Ricinus communis], gi\|223535357\|gb\|EEF37032.1\|... gi\|59800131 - gi\|59800131\|gb\|AAX07419.1\| ubiquitin/s27a 40S ribosomal protein [Nicotiana benthamiana] gi\|2894306, gi\|2... - gi\|2894306\|emb\|CAA11268.1\| ubiquitin extension protein [Nicotiana tabacum], pir\|\|T52335 ubiquitin ex...	1.0E-62	[1..151]	[1..151]
RS27A_SPOFR - Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda PE=2 SV=2	1.0E-62	[1..150]	[1..150]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRLRGGGKKR KKKVYTTPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	378.071898
Match:	1aarA_
Description:	Ubiquitin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [90-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIKHKHKKVK LAVLSYYKVD AEGKVTKLRR ECSNPTCGAG VFLANHKDRL YCGKCHSVYK  60
   61 VNA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.124939
Match:	PF01599
Description:	Ribosomal protein S27a

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.602	0.697	structural constituent of ribosome	d.50.1	dsRNA-binding domain-like
View	Download	0.404	0.019	protein ubiquitination	d.26.1	FKBP-like
View	Download	0.392	0.001	protein ubiquitination	b.61.3	D-aminopeptidase, middle and C-terminal domains
View	Download	0.565	N/A	N/A	d.9.2	Description not found.
View	Download	0.527	N/A	N/A	d.50.1	dsRNA-binding domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits