| Protein: | PPR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 904 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..904] | [1..904] |
|
|
8.0E-82 | [12..788] | [2..654] |
|
|
9.0E-82 | [16..804] | [1..676] |
|
|
1.0E-80 | [6..779] | [42..701] |
|
|
2.0E-76 | [18..800] | [23..693] |
|
|
3.0E-76 | [18..800] | [23..693] |
|
|
1.0E-73 | [8..760] | [16..636] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MKQKKFNSKK SNRTDLSKRG DSPNIGISKS RTACKRCRLK KIKCDQEFPS CKRCAKLEVP 60
61 CVSLDPATGK DVPRSYVFFL EDRLAVMMRV LKEYGVDPTK IRGNIPATSD DEPFDLKKYS 120
121 SVSSLGEEGI LPH
|
| Detection Method: |  |
| Confidence: | 533.751666 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [134-272] |
1 11 21 31 41 51
| | | | | |
1 NGLLADYLVQ KGNSMASSAI TSKSMASPQT INVQRKEFLV NSKKQDGSAL LPETGSPMTS 60
61 DARAEELRRC NKEISALGTM RESSFNSFLG DSSGISFAKL VFTATNFRQD SGDDVLDEDI 120
121 KQREQKYNGY AEAENNPHF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.508 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.543 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.473 | a.22.1 | Histone-fold |
| View | Download | 0.509 | a.7.1 | Spectrin repeat |
| View | Download | 0.472 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.465 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.455 | a.26.1 | 4-helical cytokines |
| View | Download | 0.428 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.416 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.394 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.393 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.369 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.367 | a.63.1 | Apolipophorin-III |
| View | Download | 0.352 | a.1.1 | Globin-like |
| View | Download | 0.337 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.327 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.310 | a.4.3 | ARID-like |
| View | Download | 0.306 | a.25.1 | Ferritin-like |
| View | Download | 0.288 | d.79.1 | YjgF-like |
| View | Download | 0.287 | a.22.1 | Histone-fold |
| View | Download | 0.285 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.278 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.276 | a.25.1 | Ferritin-like |
| View | Download | 0.272 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.250 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.243 | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
| View | Download | 0.242 | a.168.1 | GEF domain of SopE toxin |
| View | Download | 0.239 | a.26.1 | 4-helical cytokines |
| View | Download | 0.238 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.224 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.220 | a.59.1 | PAH2 domain |
| View | Download | 0.216 | d.162.1 | LDH C-terminal domain-like |
| View | Download | 0.214 | a.97.1 | An anticodon-binding domain of class I aminoacyl-tRNA synthetases |
| View | Download | 0.206 | a.118.8 | TPR-like |
| View | Download | 0.203 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.202 | d.104.1 | Class II aaRS and biotin synthetases |
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.80191339934741 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.50774349911815 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [273-618] |
1 11 21 31 41 51
| | | | | |
1 DPLELPPRHA AEVMISRFFV DTNSQLPLLH RELFLKKYFE PIYGPWNPNI ALASDQTGIN 60
61 SAFEIPITSA FSAHTEPKRE NVTEKIDVCS SVDVPWYDTW ETSQKVNMRP IVELPTKFHI 120
121 PYFFLNIIFA IGHATQVLKS DITTVATYKR RATKYIASLF SSSDRLEALA GTLLMVIYSI 180
181 MRPNVPGVWY TMGSVLRLTV DLGLHSEKIN KNYDAFTREI RRRLFWCVYS LDRQICSYFG 240
241 RPFGIPEESI TTRYPSLLDD SFITLTNREI DDYSDLPSPN PSSKVIALAM YKIRRIQASI 300
301 VRILYAPGAE LPRRFMDLES WRIETYNELE RWFQVDVPKN FEMMNC
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [619-904] |
1 11 21 31 41 51
| | | | | |
1 KFNSIWFDLN YHYSKSILYG LSPKFPTLND TAFKIVLDST KGTIDVFYNL CVNKKIGYTW 60
61 VAVHNMFMTG MTYLYVNFYS KNNINDCQEK VSEYTEKVLI VLKNLIGFCE SAKTCYTSYK 120
121 ILSSVVIKLK FMQINDAKGI FSDSNPLTSQ ANRMSSYDKK TNVLGFDDGT FDNKVFNRTN 180
181 FEEKAPFDIP LDEFFTELEK HSNVSQFNTL DVSEGNQVIN ESASTNTSSA LNCQSYTNNQ 240
241 DIMDILFQVT SGSVWDEFFV RSGNGNEGES SYDISKGKNS ESGGIF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [537-797] |
1 11 21 31 41 51
| | | | | |
1 LTNREIDDYS DLPSPNPSSK VIALAMYKIR RIQASIVRIL YAPGAELPRR FMDLESWRIE 60
61 TYNELERWFQ VDVPKNFEMM NCKFNSIWFD LNYHYSKSIL YGLSPKFPTL NDTAFKIVLD 120
121 STKGTIDVFY NLCVNKKIGY TWVAVHNMFM TGMTYLYVNF YSKNNINDCQ EKVSEYTEKV 180
181 LIVLKNLIGF CESAKTCYTS YKILSSVVIK LKFMQINDAK GIFSDSNPLT SQANRMSSYD 240
241 KKTNVLGFDD GTFDNKVFNR T
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [798-904] |
1 11 21 31 41 51
| | | | | |
1 NFEEKAPFDI PLDEFFTELE KHSNVSQFNT LDVSEGNQVI NESASTNTSS ALNCQSYTNN 60
61 QDIMDILFQV TSGSVWDEFF VRSGNGNEGE SSYDISKGKN SESGGIF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
