| Protein: | PPR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 904 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..904] | [1..904] |
|
|
8.0E-82 | [12..788] | [2..654] |
|
|
9.0E-82 | [16..804] | [1..676] |
|
|
1.0E-80 | [6..779] | [42..701] |
|
|
2.0E-76 | [18..800] | [23..693] |
|
|
3.0E-76 | [18..800] | [23..693] |
|
|
1.0E-73 | [8..760] | [16..636] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MKQKKFNSKK SNRTDLSKRG DSPNIGISKS RTACKRCRLK KIKCDQEFPS CKRCAKLEVP 60
61 CVSLDPATGK DVPRSYVFFL EDRLAVMMRV LKEYGVDPTK IRGNIPATSD DEPFDLKKYS 120
121 SVSSLGEEGI LPH
|
| Detection Method: |  |
| Confidence: | 533.751666 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [134-272] |
1 11 21 31 41 51
| | | | | |
1 NGLLADYLVQ KGNSMASSAI TSKSMASPQT INVQRKEFLV NSKKQDGSAL LPETGSPMTS 60
61 DARAEELRRC NKEISALGTM RESSFNSFLG DSSGISFAKL VFTATNFRQD SGDDVLDEDI 120
121 KQREQKYNGY AEAENNPHF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.80191339934741 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.67344049333457 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.50774349911815 | bayes_pls_golite062009 |
| transcription activator activity | 0.822069987038721 | bayes_pls_golite062009 |
|
Region A: Residues: [273-618] |
1 11 21 31 41 51
| | | | | |
1 DPLELPPRHA AEVMISRFFV DTNSQLPLLH RELFLKKYFE PIYGPWNPNI ALASDQTGIN 60
61 SAFEIPITSA FSAHTEPKRE NVTEKIDVCS SVDVPWYDTW ETSQKVNMRP IVELPTKFHI 120
121 PYFFLNIIFA IGHATQVLKS DITTVATYKR RATKYIASLF SSSDRLEALA GTLLMVIYSI 180
181 MRPNVPGVWY TMGSVLRLTV DLGLHSEKIN KNYDAFTREI RRRLFWCVYS LDRQICSYFG 240
241 RPFGIPEESI TTRYPSLLDD SFITLTNREI DDYSDLPSPN PSSKVIALAM YKIRRIQASI 300
301 VRILYAPGAE LPRRFMDLES WRIETYNELE RWFQVDVPKN FEMMNC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [619-904] |
1 11 21 31 41 51
| | | | | |
1 KFNSIWFDLN YHYSKSILYG LSPKFPTLND TAFKIVLDST KGTIDVFYNL CVNKKIGYTW 60
61 VAVHNMFMTG MTYLYVNFYS KNNINDCQEK VSEYTEKVLI VLKNLIGFCE SAKTCYTSYK 120
121 ILSSVVIKLK FMQINDAKGI FSDSNPLTSQ ANRMSSYDKK TNVLGFDDGT FDNKVFNRTN 180
181 FEEKAPFDIP LDEFFTELEK HSNVSQFNTL DVSEGNQVIN ESASTNTSSA LNCQSYTNNQ 240
241 DIMDILFQVT SGSVWDEFFV RSGNGNEGES SYDISKGKNS ESGGIF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [537-797] |
1 11 21 31 41 51
| | | | | |
1 LTNREIDDYS DLPSPNPSSK VIALAMYKIR RIQASIVRIL YAPGAELPRR FMDLESWRIE 60
61 TYNELERWFQ VDVPKNFEMM NCKFNSIWFD LNYHYSKSIL YGLSPKFPTL NDTAFKIVLD 120
121 STKGTIDVFY NLCVNKKIGY TWVAVHNMFM TGMTYLYVNF YSKNNINDCQ EKVSEYTEKV 180
181 LIVLKNLIGF CESAKTCYTS YKILSSVVIK LKFMQINDAK GIFSDSNPLT SQANRMSSYD 240
241 KKTNVLGFDD GTFDNKVFNR T
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [798-904] |
1 11 21 31 41 51
| | | | | |
1 NFEEKAPFDI PLDEFFTELE KHSNVSQFNT LDVSEGNQVI NESASTNTSS ALNCQSYTNN 60
61 QDIMDILFQV TSGSVWDEFF VRSGNGNEGE SSYDISKGKN SESGGIF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
