| Protein: | NUP133 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1157 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP133.
| Description | E-value | Query Range |
Subject Range |
|
|
1217.0 | [0..32] | [1047..12] |
|
|
637.0 | [0..56] | [1157..43] |
|
|
503.0 | [0..8] | [1156..6] |
|
|
496.0 | [0..8] | [1156..5] |
|
|
472.0 | [0..639] | [1083..733] |
|
|
382.0 | [0..664] | [1076..723] |
|
Region A: Residues: [1-607] |
1 11 21 31 41 51
| | | | | |
1 MSEKKVHLRL RKELSVPIAV VENESLAQLS YEEESQASLM DISMEQQQLR LHSHFDNSKV 60
61 FTENNRYIVK TLQTDYSSGF SNDDELNGYI DMQIGYGLVN DHKKVYIWNI HSTQKDTPYI 120
121 TVPFRSDDND EIAVAPRCIL TFPATMDESP LALNPNDQDE TGGLIIIKGS KAIYYEDINS 180
181 INNLNFKLSE KFSHELELPI NSSGGEKCDL MLNCEPAGIV LSTNMGRIFF ITIRNSMGKP 240
241 QLKLGKLLNK PFKLGIWSKI FNTNSSVVSL RNGPILGKGT RLVYITTNKG IFQTWQLSAT 300
301 NSHPTKLIDV NIYEAILESL QDLYPFAHGT LKIWDSHPLQ DESSQLFLSS IYDSSCNETY 360
361 YILSTIIFDS SSNSFTIFST YRLNTFMESI TDTKFKPKIF IPQMENANDT NEVTSILVMF 420
421 PNAVVITQVN SKLDSSYSMR RKWEDIVSLR NDIDIIGSGY DSKSLYVLTK QMGVLQFFVK 480
481 ENEETNSKPE VGFVKSHVDQ AVYFSKINAN PIDFNLPPEI SLDQESIEHD LKLTSEEIFH 540
541 SNGKYIPPML NTLGQHLSVR KEFFQNFLTF VAKNFNYKIS PELKLDLIEK FEILNCCIKF 600
601 NSIIRQS
|
| Detection Method: |  |
| Confidence: | 6.44 |
| Match: | 1xksA |
| Description: | The crystal structure of the N-terminal domain of Nup133 reveals a beta-propeller fold common to several nucleoporins |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [608-769] |
1 11 21 31 41 51
| | | | | |
1 DVLNDIWEKT LSNYNLTQNE HLTTKTVVIN SPDVFPVIFK QFLNHVVFVL FPSQNQNFKL 60
61 NVTNLINLCF YDGILEEGEK TIRYELLELD PMEVDTSKLP WFINFDYLNC INQCFFDFTF 120
121 ACEEEGSLDS YKEGLLKIVK ILYYQFNQFK IWINTQPVKS VN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [770-924] |
1 11 21 31 41 51
| | | | | |
1 ANDNFININN LYDDNHLDWN HVLCKVNLKE QCIQIAEFYK DLSGLVQTLQ TLDQNDSTTV 60
61 SLYETFFNEF PKEFSFTLFE YLIKHKKLND LIFRFPQQHD VLIQFFQESA PKYGHVAWIQ 120
121 QILDGSYADA MNTLKNITVD DSKKGESLSE CELHL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [925-1074] |
1 11 21 31 41 51
| | | | | |
1 NVAKLSSLLV EKDNLDINTL RKIQYNLDTI DAEKNISNKL KKGEVQICKR FKNGSIREVF 60
61 NILVEELKST TVVNLSDLVE LYSMLDDEES LFIPLRLLSV DGNLLNFEVK KFLNALVWRR 120
121 IVLLNASNEG DKLLQHIVKR VFDEELPKNN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1075-1157] |
1 11 21 31 41 51
| | | | | |
1 DFPLPSVDLL CDKSLLTPEY ISETYGRFPI DQNAIREEIY EEISQVETLN SDNSLEIKLH 60
61 STIGSVAKEK NYTINYETNT VEY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
