| Protein: | TRM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 617 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [71..607] | [1..535] |
|
|
2.0E-98 | [163..616] | [5..433] |
|
|
2.0E-97 | [163..616] | [5..433] |
|
|
8.0E-95 | [166..616] | [10..437] |
|
|
9.0E-95 | [154..616] | [2..438] |
|
|
1.0E-94 | [80..606] | [47..491] |
|
|
6.0E-92 | [104..603] | [79..586] |
|
|
4.0E-89 | [141..605] | [56..525] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MYEQFEFSFF FFENSDNKVK YKAHLISSIK RWSIITCMRC FWTVQKSIFK ARFFACRNFV 60
61 KKHNYKLIST MTGSTEMVPP TMKHTVDNKR LSSPLTDSGN RRTKKPKLRK YKAKKVETTS 120
121 PMGVLEFEVN DLLKSQNLSR EQVLNDVTSI LNDKSS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [157-240] |
1 11 21 31 41 51
| | | | | |
1 TDGPIVLQYH REVKNVKVLE ITSNGNGLAL IDNPVETEKK QVVIIPFGLP GDVVNIKVFK 60
61 THPYYVESDL LDVVEKSPMR RDDL
|
| Detection Method: | |
| Confidence: | 13.823909 |
| Match: | PF01938 |
| Description: | TRAM domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [241-357] |
1 11 21 31 41 51
| | | | | |
1 IRDKYFGKSS GSQLEFLTYD DQLELKRKTI MNAYKFFAPR LVAEKLLPPF DTTVASPLQF 60
61 GYRTKITPHF DMPKRKQKEL SVRPPLGFGQ KGRPQWRKDT LDIGGHGSIL DIDECVL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.221 | 0.243 | tRNA modification | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.232 | 0.153 | tRNA methyltransferase activity | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [358-431] |
1 11 21 31 41 51
| | | | | |
1 ATEVLNKGLT NERRKFEQEF KNYKKGATIL LRENTTILDP SKPTLEQLTE EASRDENGDI 60
61 SYVEVEDKKN NVRL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.398 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.332 | a.39.1 | EF-hand |
| View | Download | 0.413 | a.28.1 | ACP-like |
| View | Download | 0.330 | a.64.1 | Saposin |
| View | Download | 0.299 | b.35.2 | SacY-like RNA-binding domain |
| View | Download | 0.288 | d.68.3 | SirA-like |
| View | Download | 0.285 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | d.26.1 | FKBP-like |
| View | Download | 0.225 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
|
Region A: Residues: [432-617] |
1 11 21 31 41 51
| | | | | |
1 AKTCVTNPRQ IVTEYVDGYT FNFSAGEFFQ NNNSILPIVT KYVRDNLQAP AKGDDNKTKF 60
61 LVDAYCGSGL FSICSSKGVD KVIGVEISAD SVSFAEKNAK ANGVENCRFI VGKAEKLFES 120
121 IDTPSENTSV ILDPPRKGCD ELFLKQLAAY IQPRLFTYRV MSIPRHVMSS TSSKKQKTVP 180
181 PTRLKA
|
| Detection Method: | |
| Confidence: | 15.045757 |
| Match: | 1g6q1_ |
| Description: | Arginine methyltransferase, HMT1 |
Matching Structure (courtesy of the PDB): |
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