| Protein: | NAP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 417 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..417] | [1..417] |
|
|
7.0E-84 | [17..396] | [16..371] |
|
|
1.0E-79 | [34..361] | [16..343] |
|
|
4.0E-79 | [68..361] | [1..294] |
|
|
1.0E-78 | [38..361] | [20..343] |
|
|
1.0E-77 | [44..365] | [6..324] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MSDPIRTKPK SSMQIDNAPT PHNTPASVLN PSYLKNGNPV RAQAQEQDDK IGTINEEDIL 60
61 ANQPLLLQSI QDRLGSLVGQ D
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.490 | a.3.1 | Cytochrome c |
| View | Download | 0.341 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.382 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.257 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.221 | a.134.1 | Fungal elicitin |
| View | Download | 0.215 | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.204 | a.35.1 | lambda repressor-like DNA-binding domains |
| Term | Confidence | Notes |
| histone binding | 4.83364158381373 | bayes_pls_golite062009 |
| binding | 2.67502047678266 | bayes_pls_golite062009 |
| DNA binding | 1.77868687163103 | bayes_pls_golite062009 |
| nucleic acid binding | 1.77336286476068 | bayes_pls_golite062009 |
| protein binding | 1.58681138679309 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0196905966923535 | bayes_pls_golite062009 |
|
Region A: Residues: [82-417] |
1 11 21 31 41 51
| | | | | |
1 SGYVGGLPKN VKEKLLSLKT LQSELFEVEK EFQVEMFELE NKFLQKYKPI WEQRSRIISG 60
61 QEQPKPEQIA KGQEIVESLN ETELLVDEEE KAQNDSEEEQ VKGIPSFWLT ALENLPIVCD 120
121 TITDRDAEVL EYLQDIGLEY LTDGRPGFKL LFRFDSSANP FFTNDILCKT YFYQKELGYS 180
181 GDFIYDHAEG CEISWKDNAH NVTVDLEMRK QRNKTTKQVR TIEKITPIES FFNFFDPPKI 240
241 QNEDQDEELE EDLEERLALD YSIGEQLKDK LIPRAVDWFT GAALEFEFEE DEEEADEDED 300
301 EEEDDDHGLE DDDGESAEEQ DDFAGRPEQA PECKQS
|
| Detection Method: | |
| Confidence: | 151.30103 |
| Match: | PF00956 |
| Description: | Nucleosome assembly protein (NAP) |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
