YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC2D10.11c

General Information:
Name(s) found: SPBC2D10.11c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • nucleosome assembly protein Nap2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article][IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: nucleosome assembly [ISSLink to PubMed article]
    Molecular Function: histone binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGPGDFKK SWNGFAAQTP QNTPSSDVHL SKAALEKARQ TLQSQLEDKS AHDEVSGLLR  60
   61 NNPAMLSMIE GRLSSLVGKS SGYIESLAPA VQNRITALKG LQKDCDAIQY EFRQKMLDLE 120
  121 TKYEKKYQPI FSRRAEIIKG VSEPVDDELD HEEEIFQNNL PDPKGIPEFW LTCLHNVFLV 180
  181 GEMITPEDEN VLRSLSDIRF TNLSGDVHGY KLEFEFDSND YFTNKILTKT YYYKDDLSPS 240
  241 GEFLYDHAEG DKINWIKPEK NLTVRVETKK QRNRKTNQTR LVRTTVPNDS FFNFFSPPQL 300
  301 DDDESDDGLD DKTELLELDY QLGEVFKDQI IPLAIDCFLE EGDLSDFNQM DEEDSEDAYT 360
  361 DEEDLSSDDE EILSSEISD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 81.69897 The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone binding
    		•  4.83364158381373 bayes_pls_golite062009
  • binding
    		•  2.67502047678266 bayes_pls_golite062009
  • DNA binding
    		•  1.77868687163103 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.77336286476068 bayes_pls_golite062009
  • protein binding
    		•  1.58681138679309 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0196905966923535 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle