| Protein: | PEX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1043 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1043] | [1..1043] |
|
|
0.0 | [187..1023] | [1..746] |
|
|
0.0 | [222..1033] | [8..776] |
|
|
0.0 | [224..1035] | [10..778] |
|
|
0.0 | [224..1035] | [10..778] |
|
|
0.0 | [224..1035] | [10..778] |
|
|
0.0 | [225..1026] | [16..774] |
|
|
0.0 | [224..1042] | [7..786] |
|
|
0.0 | [224..1035] | [10..778] |
|
Region A: Residues: [1-199] |
1 11 21 31 41 51
| | | | | |
1 MTTTKRLKFE NLRIQFSNAI VGNFLRLPHS IINVLESTNY AIQEFGIAVH SHNSDIPIVH 60
61 LGWDGHDSGS SENVVLINPV LATVYDLNQK SPLVDLYIQR YDHTHLATEV YVTPETSDDW 120
121 EIIDANAMRF QNGEILHQTR IVTPGETLIC YLEGIVTKFK IDRVEPSMKS ARITDGSLVV 180
181 VAPKVNKTRL VKAEYGHSN
|
| Detection Method: |  |
| Confidence: | 7.29 |
| Match: | 1cz4A |
| Description: | N-terminal domain of VAT-N, VAT-Nn; C-terminal domain of VAT-N, VAT-Nc |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.64221234725269 | bayes_pls_golite062009 |
| SNARE binding | 1.16366125009416 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 1.00212582424428 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.962940053088043 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.944764954837444 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.943619625572574 | bayes_pls_golite062009 |
| ATPase activity | 0.893914707387449 | bayes_pls_golite062009 |
| catalytic activity | 0.767627914425245 | bayes_pls_golite062009 |
| syntaxin binding | 0.67705852056624 | bayes_pls_golite062009 |
| protein binding | 0.634982583867058 | bayes_pls_golite062009 |
| hydrolase activity | 0.285603455436646 | bayes_pls_golite062009 |
|
Region A: Residues: [200-317] |
1 11 21 31 41 51
| | | | | |
1 KTILKNGAIQ LLKKVILRST VCKMDFPKDN LFVVYISDGA QLPSQKGYAS IVKCSLRQSK 60
61 KSDSDNKSVG IPSKKIGVFI KCDSQIPENH IALSSHLWDA FFTHPMNGAK IKLEFLQM
|
| Detection Method: | |
| Confidence: | 526.457575 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [318-414] |
1 11 21 31 41 51
| | | | | |
1 NQANIISGRN ATVNIKYFGK DVPTKSGDQY SKLLGGSLLT NNLILPTEQI IIEIKKGESE 60
61 QQLCNLNEIS NESVQWKVTQ MGKEEVKDII ERHLPKH
|
| Detection Method: | |
| Confidence: | 526.457575 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [415-602] |
1 11 21 31 41 51
| | | | | |
1 YHVKETGEVS RTSKDEDDFI TVNSIKKEMV NYLTSPIIAT PAIILDGKQG IGKTRLLKEL 60
61 INEVEKDHHI FVKYADCETL HETSNLDKTQ KLIMEWCSFC YWYGPSLIVL DNVEALFGKP 120
121 QANDGDPSNN GQWDNASKLL NFFINQVTKI FNKDNKRIRV LFSGKQKTQI NPLLFDKHFV 180
181 SETWSLRA
|
| Detection Method: | |
| Confidence: | 526.457575 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [603-689] |
1 11 21 31 41 51
| | | | | |
1 PDKHARAKLL EYFFSKNQIM KLNRDLQFSD LSLETEGFSP LDLEIFTEKI FYDLQLERDC 60
61 DNVVTRELFS KSLSAFTPSA LRGVKLT
|
| Detection Method: | |
| Confidence: | 526.457575 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [690-821] |
1 11 21 31 41 51
| | | | | |
1 KETNIKWGDI GALANAKDVL LETLEWPTKY EPIFVNCPLR LRSGILLYGY PGCGKTLLAS 60
61 AVAQQCGLNF ISVKGPEILN KFIGASEQNI RELFERAQSV KPCILFFDEF DSIAPKRGHD 120
121 STGVTDRVVN QL
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 1g4aE_ |
| Description: | HslU |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [822-970] |
1 11 21 31 41 51
| | | | | |
1 LTQMDGAEGL DGVYILAATS RPDLIDSALL RPGRLDKSVI CNIPTESERL DILQAIVNSK 60
61 DKDTGQKKFA LEKNADLKLI AEKTAGFSGA DLQGLCYNAY LKSVHRWLSA ADQSEVVPGN 120
121 DNIEYFSINE HGRREENRLR LKTLLQQDV
|
| Detection Method: | |
| Confidence: | 13.02 |
| Match: | 1hqcA |
| Description: | Holliday junction helicase RuvB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [971-1043] |
1 11 21 31 41 51
| | | | | |
1 VHETKTSTSA ASELTAVVTI NDLLEACQET KPSISTSELV KLRGIYDRFQ KDRNGEMPNG 60
61 ENSIDIGSRL SLM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.561 | a.39.1 | EF-hand |
| View | Download | 0.569 | a.101.1 | Uteroglobin-like |
| View | Download | 0.442 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.422 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.410 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.388 | a.101.1 | Uteroglobin-like |
| View | Download | 0.385 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.383 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.381 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.349 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.330 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.329 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.329 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.327 | a.39.1 | EF-hand |
| View | Download | 0.319 | a.101.1 | Uteroglobin-like |
| View | Download | 0.304 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.297 | a.39.1 | EF-hand |
| View | Download | 0.289 | a.39.1 | EF-hand |
| View | Download | 0.278 | a.126.1 | Serum albumin-like |
| View | Download | 0.259 | a.112.1 | Description not found. |
| View | Download | 0.255 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.253 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.237 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.234 | a.39.1 | EF-hand |
| View | Download | 0.233 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.227 | a.2.7 | tRNA-binding arm |
| View | Download | 0.220 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.216 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.216 | a.17.1 | p8-MTCP1 |
| View | Download | 0.214 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.210 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.207 | a.42.1 | MDM2 |
| View | Download | 0.207 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.206 | a.126.1 | Serum albumin-like |
| View | Download | 0.202 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.200 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
