| Protein: | APL2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 726 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APL2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..726] | [1..726] |
|
|
0.0 | [25..726] | [12..694] |
|
|
0.0 | [25..726] | [12..694] |
|
|
0.0 | [20..726] | [7..706] |
|
|
0.0 | [20..685] | [7..650] |
|
|
0.0 | [20..642] | [7..635] |
|
|
0.0 | [20..665] | [9..645] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MPPLDKRIKK FLKDSIRIAP KISGKGELSE LRTGLVSQYP QTRKDAIKKT IQQMTLGKDV 60
61 SSLFPDVLKN IATIDVEQKK LVYLYVMNYA ETHPELCILA VNT
|
| Detection Method: |  |
| Confidence: | 1164.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [104-210] |
1 11 21 31 41 51
| | | | | |
1 FITDAQDPNP LIRCMAIRTM SMIRVDKILE YIETPLRRTL HDDNAYVRKT AVICVAKLFQ 60
61 LNKDLCVELG VVEDLVNALD DSNPLVIANA TAALIEIHNM DMDAVDL
|
| Detection Method: | |
| Confidence: | 1164.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-345] |
1 11 21 31 41 51
| | | | | |
1 SSLIQSHVSQ FLLALNECTE WARIIILGTL SEYSAKDSLE AQDIIDRVTA HLQHVNPAVV 60
61 LATIKVIVRN LPQIEYSSNS LIMKRLSSAF VSLMSTPPEM QYVALKNIRI ILEKYPELLT 120
121 KELRIFYVKF NDPLY
|
|
Region B: Residues: [577-633] |
1 11 21 31 41 51
| | | | | |
1 SPEVLEKLLM ELGTISSIYF KPDSNRRKGK KYVQNIVKGK HIEELESMAK NEISSKA
|
| Detection Method: | |
| Confidence: | 1164.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-440] |
1 11 21 31 41 51
| | | | | |
1 VKLEKIDILV RLVDPSNLKQ CTLLLTELKE YAMEYEPEFV SRAIQALSQL GIKYAQESFV 60
61 SKVLDILLEL LERQDTIKDD CCISLCDLLR HCPGN
|
| Detection Method: | |
| Confidence: | 1164.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [441-576] |
1 11 21 31 41 51
| | | | | |
1 DKMAKQVCAV FNTWSNPEVL LQSDIAKCNY VWLLGQHPNN FSDLESKINI FIENFVQEEA 60
61 LTQMSLLMTI VRLHATLTGS MLQSVLELAT QQTHELDVRD MAMMYWRCLS MPNNESLVND 120
121 LCQNKLPMIS NTLEKF
|
| Detection Method: | |
| Confidence: | 1164.0 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [634-726] |
1 11 21 31 41 51
| | | | | |
1 NDDVLLDFDE RDDVTNTNAG MLNTLTTLGD LDDLFDFGPS EDATQINTND TKAVQGLKEL 60
61 KLGGDSNGIS SGGKNNPDVS GGNIVSQDLL DLF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.244 | a.46.1 | Methionine synthase domain |
| View | Download | 0.225 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
