| Protein: | PUT3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 979 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUT3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..979] | [1..979] |
|
|
2.0E-98 | [2..948] | [20..1056] |
|
|
2.0E-93 | [10..883] | [15..759] |
|
|
5.0E-88 | [10..852] | [15..728] |
|
|
4.0E-87 | [11..872] | [17..766] |
|
|
2.0E-83 | [4..872] | [23..738] |
|
Region A: Residues: [1-132] |
1 11 21 31 41 51
| | | | | |
1 MVTDQGSRHS IQSKQPAYVN KQPQKRQQRS SVACLSCRKR HIKCPGGNPC QKCVTSNAIC 60
61 EYLEPSKKIV VSTKYLQQLQ KDLNDKTEEN NRLKALLLER PVSVRGKDNS DDDERHINNA 120
121 PSSDTLEVSS AP
|
| Detection Method: |  |
| Confidence: | 366.927757 |
| Match: | 1ajyA_ |
| Description: | PUT3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [133-813] |
1 11 21 31 41 51
| | | | | |
1 AAPIFDLMSN SNTASDNDND DDNSNRITNN RSYDHSLEKY YKKAISIFKQ PANANGENGN 60
61 GANGHEDDDE DDEEISTNFA QRSGRLIESH NGFHYFVGSS SMTLFGLEIQ SLVTKYISVK 120
121 NFRPLPINTK NKILNSNLNP AISSFINSNN YLFSSYNFLN PISTIVNLNS INDNLSPLMF 180
181 KIILKSDTDG SSGQEEVIQF QLPSYNYTKL LIDCFINYND GCFYFFNEGL VKCGINKLYL 240
241 ENKWLYYDNT KKALDNENDP ILQAVWFCKI LLILAVGEMY LGSINNEMLK NYSNQPKLPG 300
301 SKFFQMGSKI FNCLFSSERL ENVTKKGGIE VLLLYAFFLQ VADYTLASYF YFGQALRTCL 360
361 ILGLHVDSQS DTLSRYEIEH HRRLWWTVYM FERMLSSKAG LPLSFTDYTI STALPADIDD 420
421 ETIEEKNSHY VFRKAELISN CVTIVKINAQ ILSKLYQRQP ETNIIITLKV VIKQLLEWRN 480
481 NLSDSLQVDF TQKDEDFKIS RLSTNMFTEY FQGINLAVRP LLFHFASIQL KRFKTSNTFV 540
541 NLQNYSATIS SLLTCSLHAS VNTIRSLWSL LQNSMLAMFS YMDREYLFTS SCTLLLFNTA 600
601 FGIHEQTLYH LDHSLEIFTQ MRNLGNIPAG LRRAQLLTLM ANLDFHGIMN DLITKYNDIL 660
661 KFDSMNCEND NIVEDSNEPK R
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.77469997789536 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.70904317608141 | bayes_pls_golite062009 |
| transcription activator activity | 2.1512787242583 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.08956709478484 | bayes_pls_golite062009 |
|
Region A: Residues: [814-979] |
1 11 21 31 41 51
| | | | | |
1 ETEKCKPHKD GDRIDPSIID CDKSNTNTNM IKNESISNIV SILPEGAKPT LTDYSNGNND 60
61 VNDINVNNSE PSTFFDIITA SLENSYQTTL TEKGSQVMEK NMDQLDSVHN LNDDDLQQLL 120
121 EDLGNIDHSD EKLWKEITDQ AMWLGNTMDP TAAAGSEIDF TDYLGP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.234 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.258 | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.244 | a.172.1 | Helical scaffold and wing domains of SecA |
|
Region A: Residues: [454-564] |
1 11 21 31 41 51
| | | | | |
1 NVTKKGGIEV LLLYAFFLQV ADYTLASYFY FGQALRTCLI LGLHVDSQSD TLSRYEIEHH 60
61 RRLWWTVYMF ERMLSSKAGL PLSFTDYTIS TALPADIDDE TIEEKNSHYV F
|
| Detection Method: | |
| Confidence: | 26.69897 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [565-778] |
1 11 21 31 41 51
| | | | | |
1 RKAELISNCV TIVKINAQIL SKLYQRQPET NIIITLKVVI KQLLEWRNNL SDSLQVDFTQ 60
61 KDEDFKISRL STNMFTEYFQ GINLAVRPLL FHFASIQLKR FKTSNTFVNL QNYSATISSL 120
121 LTCSLHASVN TIRSLWSLLQ NSMLAMFSYM DREYLFTSSC TLLLFNTAFG IHEQTLYHLD 180
181 HSLEIFTQMR NLGNIPAGLR RAQLLTLMAN LDFH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [779-979] |
1 11 21 31 41 51
| | | | | |
1 GIMNDLITKY NDILKFDSMN CENDNIVEDS NEPKRETEKC KPHKDGDRID PSIIDCDKSN 60
61 TNTNMIKNES ISNIVSILPE GAKPTLTDYS NGNNDVNDIN VNNSEPSTFF DIITASLENS 120
121 YQTTLTEKGS QVMEKNMDQL DSVHNLNDDD LQQLLEDLGN IDHSDEKLWK EITDQAMWLG 180
181 NTMDPTAAAG SEIDFTDYLG P
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.258 | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.244 | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.234 | a.24.9 | alpha-catenin/vinculin |
