| Protein: | HMS2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 358 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMS2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..358] | [1..358] |
|
|
4.0E-67 | [6..229] | [33..251] |
|
|
8.0E-63 | [3..227] | [8..227] |
|
|
1.0E-62 | [3..227] | [8..227] |
|
|
1.0E-61 | [2..239] | [3..221] |
|
|
1.0E-61 | [6..229] | [35..253] |
|
|
2.0E-61 | [6..243] | [14..250] |
|
|
2.0E-61 | [6..243] | [14..250] |
|
|
3.0E-61 | [3..227] | [8..227] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MDATSRMEQP DVFVSKLYHL LQGNAYSNII QWSTDGSKLV IWNPDQFTKV ILERFFGIHT 60
61 FAAFVKQLSK YNFQKAGRPD CVEFSNIHFQ KDNINSLSLV KAHQSAATPN VAA
|
| Detection Method: |  |
| Confidence: | 86.124002 |
| Match: | 3htsB_ |
| Description: | Heat-shock transcription factor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.22637331076146 | bayes_pls_golite062009 |
| nucleic acid binding | 3.05427098674 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.09351769815632 | bayes_pls_golite062009 |
| transcription repressor activity | 0.97608021324937 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.29742933266479 | bayes_pls_golite062009 |
|
Region A: Residues: [114-253] |
1 11 21 31 41 51
| | | | | |
1 VNNMNKQCTF HWDPFKVNSI LSKAIGKPSF EKLVKNVDRL QGNLDELKST NADSLRIIRE 60
61 INASLQTISY HQFHAYQTAN FLQENFEAIK KVVCPDSCLQ HQQRQPKRPK RYSLLLLIPN 120
121 ASELSETPLM RFAGVFEFMN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [254-358] |
1 11 21 31 41 51
| | | | | |
1 CSLDTATQWH PQLHPEAYDL LFVTVSPNMQ QEHLIYFKRL RNLLPSFPVI AIINRPVSPQ 60
61 DTSIAPSNYS RYYFHHFLQL GFSDILVSPF TPTQLITLLS KHLRT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.899 | 0.840 | pseudohyphal growth | c.47.1 | Thioredoxin-like |
