| Protein: | JHD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 728 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JHD2.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..728] | [1..728] |
|
|
0.0 | [2..687] | [167..886] |
|
|
0.0 | [5..674] | [32..664] |
|
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0.0 | [130..687] | [1..555] |
|
|
0.0 | [2..547] | [17..602] |
|
|
0.0 | [1..671] | [57..696] |
|
|
0.0 | [34..677] | [272..903] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MEEIPALYPT EQEFKNPIDY LSNPHIKRLG VRYGMVKVVP PNGFCPPLSI DMENFTFQPR 60
61 IQNLENLDLK
|
| Detection Method: |  |
| Confidence: | 25.69897 |
| Match: | PF02375 |
| Description: | jmjN domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [71-231] |
1 11 21 31 41 51
| | | | | |
1 NRCRLFFMKQ LNNFKRSVKD PSKLILREPY TIVEYSDSTH ASEILKKKVY FYDVFSELIK 60
61 DNRTLTDTTQ SFRRKLKFRD ISQLRGDISL WRTISKKFNV PIGLLKEIFE KYIASYYIFL 120
121 HSLNENVHTA LHADQYPKSL LSDDEDDFDL GPDSNSGSDF E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.343 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.303 | a.1.1 | Globin-like |
| View | Download | 0.246 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.263 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.327 | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.235 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.230 | a.118.1 | ARM repeat |
| View | Download | 0.216 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.215 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
|
Region A: Residues: [232-318] |
1 11 21 31 41 51
| | | | | |
1 EDDDDACIVC RKTNDPKRTI LCDSCDKPFH IYCLSPPLER VPSGDWICNT CIVGNGYYGF 60
61 TQDTHDYSLP EFQEYCKRQN SRLLPAR
|
| Detection Method: | |
| Confidence: | 98.980454 |
| Match: | 1f62A_ |
| Description: | Williams-Beuren syndrome transcription factor, WSTF |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [319-377] |
1 11 21 31 41 51
| | | | | |
1 KLSIDELEEM FWSLVTKNRR SSLTTVKYGA DIHNELPGQI TGFPTREFIP KNINGDELI
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.646 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.611 | 0.932 | nucleus | a.64.1 | Saposin |
| View | Download | 0.460 | 0.932 | nucleus | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.543 | 0.932 | nucleus | g.63.1 | Mollusk pheromone |
| View | Download | 0.542 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.485 | 0.932 | nucleus | a.1.1 | Globin-like |
| View | Download | 0.450 | 0.932 | nucleus | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.443 | 0.932 | nucleus | a.20.1 | PGBD-like |
| View | Download | 0.414 | 0.932 | nucleus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.387 | 0.932 | nucleus | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.373 | 0.932 | nucleus | a.178.1 | Soluble domain of poliovirus core protein 3a |
| View | Download | 0.370 | 0.932 | nucleus | c.32.1 | Tubulin/Dihydroxyacetone kinase nucleotide-binding domain |
| View | Download | 0.339 | 0.932 | nucleus | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.339 | 0.932 | nucleus | a.1.1 | Globin-like |
| View | Download | 0.330 | 0.932 | nucleus | a.1.1 | Globin-like |
| View | Download | 0.313 | 0.932 | nucleus | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.311 | 0.932 | nucleus | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.298 | 0.932 | nucleus | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.297 | 0.932 | nucleus | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.295 | 0.932 | nucleus | d.64.1 | eIF1-like |
| View | Download | 0.288 | 0.932 | nucleus | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.288 | 0.932 | nucleus | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.271 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.267 | 0.932 | nucleus | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.266 | 0.932 | nucleus | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.265 | 0.932 | nucleus | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.262 | 0.932 | nucleus | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.255 | 0.932 | nucleus | a.39.1 | EF-hand |
| View | Download | 0.255 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.254 | 0.932 | nucleus | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.247 | 0.932 | nucleus | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.246 | 0.932 | nucleus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | 0.932 | nucleus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.240 | 0.932 | nucleus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.240 | 0.932 | nucleus | a.64.1 | Saposin |
| View | Download | 0.231 | 0.932 | nucleus | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.218 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.214 | 0.932 | nucleus | a.22.1 | Histone-fold |
| View | Download | 0.212 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
| View | Download | 0.209 | 0.932 | nucleus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.208 | 0.932 | nucleus | a.3.1 | Cytochrome c |
| View | Download | 0.201 | 0.932 | nucleus | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [378-554] |
1 11 21 31 41 51
| | | | | |
1 DYLKYCDHPM NLTNLPMAHN SLLPLFKRNI SGMTIPWIYI GSLFSTFCWH MEDQYTLSAN 60
61 YQHEGDPKVW YSIPESGCTK FNDLLNDMSP DLFIKQPDLL HQLVTLISPY DPNFKKSGIP 120
121 VYKAVQKPNE YIITFPKCYH AGFNTGYNFN EAVNFTIDFW LPYGFGAITD YKLTQKA
|
| Detection Method: | |
| Confidence: | 8.33 |
| Match: | 1mzeA |
| Description: | Hypoxia-inducible factor HIF ihhibitor (FIH1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [555-728] |
1 11 21 31 41 51
| | | | | |
1 CVFDMFDLMI NVLDKYNKDT LLFNDAFVRQ CYSSLIVFYN TELKRIRKIQ AIVPRTTLLE 60
61 VHTDPNDEDE EYDIFCSQCK TICSIAFVLR KNNYDSIRTY KRHKKNHLSI RQWNELSTTD 120
121 SKVSILCTQD YLKSIQNLNN SDGEEPYIDD ELYFTKSLKD IDSLIKQVGV KLDR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.485 | 0.726 | cytoplasm | a.1.1 | Globin-like |
| View | Download | 0.370 | 0.069 | cytoplasm | c.32.1 | Tubulin/Dihydroxyacetone kinase nucleotide-binding domain |
| View | Download | 0.266 | 0.025 | cytoplasm | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.246 | N/A | N/A | d.127.1 | Creatinase/aminopeptidase |
| View | Download | 0.228 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.205 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.202 | N/A | N/A | a.22.1 | Histone-fold |
