| Protein: | JHD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 728 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JHD2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..728] | [1..728] |
|
|
0.0 | [2..687] | [167..886] |
|
|
0.0 | [5..674] | [32..664] |
|
|
0.0 | [130..687] | [1..555] |
|
|
0.0 | [2..547] | [17..602] |
|
|
0.0 | [1..671] | [57..696] |
|
|
0.0 | [34..677] | [272..903] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MEEIPALYPT EQEFKNPIDY LSNPHIKRLG VRYGMVKVVP PNGFCPPLSI DMENFTFQPR 60
61 IQNLENLDLK
|
| Detection Method: |  |
| Confidence: | 25.69897 |
| Match: | PF02375 |
| Description: | jmjN domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [71-231] |
1 11 21 31 41 51
| | | | | |
1 NRCRLFFMKQ LNNFKRSVKD PSKLILREPY TIVEYSDSTH ASEILKKKVY FYDVFSELIK 60
61 DNRTLTDTTQ SFRRKLKFRD ISQLRGDISL WRTISKKFNV PIGLLKEIFE KYIASYYIFL 120
121 HSLNENVHTA LHADQYPKSL LSDDEDDFDL GPDSNSGSDF E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [232-318] |
1 11 21 31 41 51
| | | | | |
1 EDDDDACIVC RKTNDPKRTI LCDSCDKPFH IYCLSPPLER VPSGDWICNT CIVGNGYYGF 60
61 TQDTHDYSLP EFQEYCKRQN SRLLPAR
|
| Detection Method: | |
| Confidence: | 98.980454 |
| Match: | 1f62A_ |
| Description: | Williams-Beuren syndrome transcription factor, WSTF |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [319-377] |
1 11 21 31 41 51
| | | | | |
1 KLSIDELEEM FWSLVTKNRR SSLTTVKYGA DIHNELPGQI TGFPTREFIP KNINGDELI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.646 | 0.932 | nucleus | a.4.1 | Homeodomain-like |
|
Region A: Residues: [378-554] |
1 11 21 31 41 51
| | | | | |
1 DYLKYCDHPM NLTNLPMAHN SLLPLFKRNI SGMTIPWIYI GSLFSTFCWH MEDQYTLSAN 60
61 YQHEGDPKVW YSIPESGCTK FNDLLNDMSP DLFIKQPDLL HQLVTLISPY DPNFKKSGIP 120
121 VYKAVQKPNE YIITFPKCYH AGFNTGYNFN EAVNFTIDFW LPYGFGAITD YKLTQKA
|
| Detection Method: | |
| Confidence: | 8.33 |
| Match: | 1mzeA |
| Description: | Hypoxia-inducible factor HIF ihhibitor (FIH1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [555-728] |
1 11 21 31 41 51
| | | | | |
1 CVFDMFDLMI NVLDKYNKDT LLFNDAFVRQ CYSSLIVFYN TELKRIRKIQ AIVPRTTLLE 60
61 VHTDPNDEDE EYDIFCSQCK TICSIAFVLR KNNYDSIRTY KRHKKNHLSI RQWNELSTTD 120
121 SKVSILCTQD YLKSIQNLNN SDGEEPYIDD ELYFTKSLKD IDSLIKQVGV KLDR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
