| Protein: | MGA2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1113 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGA2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1113] | [1..1113] |
|
|
0.0 | [335..1011] | [93..792] |
|
|
0.0 | [335..1011] | [76..775] |
|
|
0.0 | [335..1011] | [93..800] |
|
Region A: Residues: [1-346] |
1 11 21 31 41 51
| | | | | |
1 MQQNSEFLTE TPGSDPHISQ LHANSVMESQ LLDDFLLNGS PMYQDDSMAH INIDEGANFQ 60
61 NFIKTDEGDS PNLLSFEGIG NNTHVNQNVS TPLEEEMESN RALKEEEEDE HENKVFNEKN 120
121 IGNPAHDEIV FGRKETIQSV YINPLDYLKV NAAQLPLDVE VSGLPQVSRV ENQLKLKVKI 180
181 TSETPLNQSM LYLPSDSISR EKFYLKKNIE DFSEDFKKNL LYINAFVLCA VSNRTTNVCT 240
241 KCVKREQRRA ARRKSGIADN LLWCNNINRR LVVFNNKQVF PIMKTFDNVK EFELTTRLVC 300
301 YCRHHKANNG FVILFTITDW QNRLLGKFTT TPIMITDRKP ANMDTT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [347-524] |
1 11 21 31 41 51
| | | | | |
1 KFNNTTTSSR RQLTEEESTT EYYSTDNNQL SKDENMPFQY TYQHNPYDND SQMNNIPLKD 60
61 KNVPFPYSIS QQTDLLQNNN LSLNLSLPNQ HIPSPTSMSE EGSESFNYHH RDNDNPVRTI 120
121 SLTNIEQQSQ LNQRKRARNN LENDIGKPLF KHSFSNSISA TNTMNPALHS MQDFSMKN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [525-682] |
1 11 21 31 41 51
| | | | | |
1 NNNNLPSINR VIPSQGPING GIEVTLLGCN FKDGLSVKFG SNLALSTQCW SETTIVTYLP 60
61 PAAYAGQVFV SITDTNNENN NDDLPQEIEI NDNKKAIFTY VDDTDRQLIE LALQIVGLKM 120
121 NGKLEDARNI AKRIVGNDSP DSGTNGNSCS KSTGPSPN
|
| Detection Method: | |
| Confidence: | 77.211549 |
| Match: | 1k1aA_ |
| Description: | bcl-3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [683-801] |
1 11 21 31 41 51
| | | | | |
1 QHSMNLNTSV LYSDEVLIQK VIKSLNINSN ISICDSLGRT LLHLACLKNY SSLVYTLIKK 60
61 GARVNDIDSF GLTPLHFACI SGDPKIIKML LNCKVNYSLR SHNGLTAREV FIANHIHSK
|
| Detection Method: | |
| Confidence: | 77.211549 |
| Match: | 1k1aA_ |
| Description: | bcl-3 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [802-869] |
1 11 21 31 41 51
| | | | | |
1 EIDKKQDNRD NHKFVHNDTY ISEVLSLFEE FQNGTKFTDS VETDSNYSIS RKYSQSSFNS 60
61 SLLDNESL
|
| Detection Method: | |
| Confidence: | 16.045757 |
| Match: | 1lnnA_ |
| Description: | No description for 1lnnA_ was found. |
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.17983095277661 | bayes_pls_golite062009 |
| transcription regulator activity | 1.77275610412175 | bayes_pls_golite062009 |
| nucleic acid binding | 1.31270638552607 | bayes_pls_golite062009 |
| DNA binding | 1.1922382945387 | bayes_pls_golite062009 |
| transcription activator activity | 1.13308454180419 | bayes_pls_golite062009 |
| transcription factor activity | 0.72431748142192 | bayes_pls_golite062009 |
| transcription factor binding | 0.56378250255767 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.443598477652456 | bayes_pls_golite062009 |
| signal transducer activity | 0.177373330518427 | bayes_pls_golite062009 |
| molecular transducer activity | 0.177373330518427 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.0844768926216624 | bayes_pls_golite062009 |
|
Region A: Residues: [870-980] |
1 11 21 31 41 51
| | | | | |
1 NENLFESQSM INPTSMEIQH PTLQLFENSS YSEYDQSDFE EDGDEDLFVT DEVEKPGVAC 60
61 REEQSELLDI GSSANEPEED NGSTSLWNRV LHRINDDLPK YEDLFPLSWG K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [981-1059] |
1 11 21 31 41 51
| | | | | |
1 DDKLKTTNQD SIVEQSASNI ENSENSEEED YEEEEEFLKK QFNRFFQNKQ NFRNDKMLIF 60
61 FWIPLTLLLL TWFIMYKFG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1060-1113] |
1 11 21 31 41 51
| | | | | |
1 NQDSSINHIS ELISEYLRIA LAKFLLGNER MKTAFRSKLS NLQTTRMLND LIVS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
