| Protein: | XBP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 647 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XBP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..647] | [1..647] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MKYPAFSINS DTVHLTDNPL DDYQRLYLVS VLDRDSPPAS FSAGLNIRKV NYKSSIAAQF 60
61 THPNFIISAR DAGNGEEAAA QNVLNCFEYQ FPNLQTIQSL VHEQTLLSQL ASSA
|
|
Region B: Residues: [222-254] |
1 11 21 31 41 51
| | | | | |
1 LPRGDSVSTS QQQFFCKAEF EKILSFCFYN HSS
|
|
Region C: Residues: [282-399] |
1 11 21 31 41 51
| | | | | |
1 TFLDANASSS STSSTQANNY IDFHWNNIKP ELRDLICQSY KDFLINELGP DQIDLPNLNP 60
61 ANFTKRIRGG YIKIQGTWLP MEISRLLCLR FCFPIRYFLV PIFGPDFPKD CESWYLAH
|
|
Region D: Residues: [456-495] |
1 11 21 31 41 51
| | | | | |
1 QKLVIEDALP SFDSFVENLG LSSNDKNFIK KNSKRQKSST
|
| Detection Method: |  |
| Confidence: | 7.03 |
| Match: | 1ruxA |
| Description: | Adenovirus hexon |
|
Region A: Residues: [115-221] |
1 11 21 31 41 51
| | | | | |
1 TPHSALHLHD KNILMGKIIL PSRSNKTPVS ASPTKQEKKA LSTASRENAT SSLTKNQQFK 60
61 LTKMDHNLIN DKLINPNNCV IWSHDSGYVF MTGIWRLYQD VMKGLIN
|
|
Region B: Residues: [255-281] |
1 11 21 31 41 51
| | | | | |
1 FTSEESSSVL LSSSTSSPPK RRTSTGS
|
|
Region C: Residues: [400-455] |
1 11 21 31 41 51
| | | | | |
1 QNVTFASSTT GAGAATAATA AANTSTNFTS TAVARPRQKP RPRPRQRSTS MSHSKA
|
|
Region D: Residues: [496-647] |
1 11 21 31 41 51
| | | | | |
1 YTSQTSSPIG PRDPTVQILS NLASFYNTHG HRYSYPGNIY IPQQRYSLPP PNQLSSPQRQ 60
61 LNYTYDHIHP VPSQYQSPRH YNVPSSPIAP APPTFPQPYG DDHYHFLKYA SEVYKQQNQR 120
121 PAHNTNTNMD TSFSPRANNS LNNFKFKTNS KQ
|
| Detection Method: | |
| Confidence: | 7.03 |
| Match: | 1ruxA |
| Description: | Adenovirus hexon |
| Term | Confidence | Notes |
| binding | 2.1591777721979 | bayes_pls_golite062009 |
| DNA binding | 1.61369890668807 | bayes_pls_golite062009 |
| nucleic acid binding | 1.45716149387929 | bayes_pls_golite062009 |
| transcription regulator activity | 0.809468114799958 | bayes_pls_golite062009 |
| transcription factor activity | 0.590391518925168 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.25989279929812 | bayes_pls_golite062009 |
| protein binding | 0.249603995881649 | bayes_pls_golite062009 |
|
Region A: Residues: [442-647] |
1 11 21 31 41 51
| | | | | |
1 RPRQRSTSMS HSKAQKLVIE DALPSFDSFV ENLGLSSNDK NFIKKNSKRQ KSSTYTSQTS 60
61 SPIGPRDPTV QILSNLASFY NTHGHRYSYP GNIYIPQQRY SLPPPNQLSS PQRQLNYTYD 120
121 HIHPVPSQYQ SPRHYNVPSS PIAPAPPTFP QPYGDDHYHF LKYASEVYKQ QNQRPAHNTN 180
181 TNMDTSFSPR ANNSLNNFKF KTNSKQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
