| Protein: | YRB2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 327 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRB2.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-74 | [2..325] | [1134..1464] |
|
|
5.0E-74 | [2..325] | [1947..2277] |
|
|
1.0E-72 | [2..325] | [2110..2440] |
|
|
6.0E-65 | [17..325] | [1..305] |
|
|
2.0E-60 | [2..297] | [963..1265] |
|
|
5.0E-48 | [1..327] | [1..327] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MSETNGGNAA RENSEVKQTA VENPIDKLDG TPKRPREKDQ DEQAEETSDK SEAPNKNDEE 60
61 KKEEGKKDQE PSHKKIKVDD GKTVESGIVE DDKKEDKFVF GAASKFGTGF GVA
|
| Detection Method: |  |
| Confidence: | 7.87 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [114-189] |
1 11 21 31 41 51
| | | | | |
1 KKDTKDGDAT TSTESLPASD SKTKKPFAFG SGLSFGSGFN ILKNKTENNS ESEKKATDVD 60
61 KDKVHSGSEQ LANASE
|
| Detection Method: | |
| Confidence: | 7.87 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
| Term | Confidence | Notes |
| binding | 3.29080729281876 | bayes_pls_golite062009 |
| protein binding | 2.12168271674167 | bayes_pls_golite062009 |
| transcription regulator activity | 2.10584700564436 | bayes_pls_golite062009 |
| nucleic acid binding | 1.85794418941003 | bayes_pls_golite062009 |
| DNA binding | 1.77960272183811 | bayes_pls_golite062009 |
| transporter activity | 1.28986800087234 | bayes_pls_golite062009 |
| molecular transducer activity | 1.15625292719687 | bayes_pls_golite062009 |
| signal transducer activity | 1.15625292719687 | bayes_pls_golite062009 |
| Ran GTPase binding | 1.07023555877478 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.79883446648737 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.74133713912741 | bayes_pls_golite062009 |
| actin binding | 0.57235223545021 | bayes_pls_golite062009 |
| receptor activity | 0.369903612832044 | bayes_pls_golite062009 |
| histone binding | 0.359498460253937 | bayes_pls_golite062009 |
| protein domain specific binding | 0.18356841109571 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.159652062741581 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0611639610381174 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0524559849408587 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0498422520006935 | bayes_pls_golite062009 |
|
Region A: Residues: [190-327] |
1 11 21 31 41 51
| | | | | |
1 DTKDKPKPLK LQKQEVKSGE ESEECIYQVN AKLYQLSNIK EGWKERGVGI IKINKSKDDV 60
61 EKTRIVMRSR GILKVILNIQ LVKGFTVQKG FTGSLQSEKF IRLLAVDDNG DPAQYAIKTG 120
121 KKETTDELYN IIVKSVPK
|
| Detection Method: | |
| Confidence: | 105.39794 |
| Match: | 1rrpB_ |
| Description: | Nuclear pore complex protein Nup358 |
Matching Structure (courtesy of the PDB): |
|
